Package: regionalpcs
Title: Summarizing Regional Methylation with Regional Principal
        Components Analysis
Version: 1.7.0
Authors@R: 
    person("Tiffany", "Eulalio", , "tyeulalio@gmail.com", 
           role = c("aut", "cre"), 
           comment = c(ORCID = "0000-0002-7084-9646"))
Description: 
    Functions to summarize DNA methylation data using regional principal
    components. Regional principal components are computed using principal 
    components analysis within genomic regions to summarize the variability 
    in methylation levels across CpGs. The number of principal components is
    chosen using either the Marcenko-Pasteur or Gavish-Donoho method to
    identify relevant signal in the data.
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
URL: https://github.com/tyeulalio/regionalpcs
BugReports: https://github.com/tyeulalio/regionalpcs/issues
biocViews: DNAMethylation, DifferentialMethylation, StatisticalMethod,
        Software, MethylationArray
Imports: dplyr, PCAtools, tibble, GenomicRanges
Suggests: knitr, rmarkdown, RMTstat, testthat (>= 3.0.0), BiocStyle,
        tidyr, minfiData, TxDb.Hsapiens.UCSC.hg19.knownGene, IRanges
Config/testthat/edition: 3
VignetteBuilder: knitr
Depends: R (>= 4.3.0)
git_url: https://git.bioconductor.org/packages/regionalpcs
git_branch: devel
git_last_commit: 2561ac0
git_last_commit_date: 2025-04-15
Repository: Bioconductor 3.22
Date/Publication: 2025-06-04
NeedsCompilation: no
Packaged: 2025-06-05 01:33:13 UTC; biocbuild
Author: Tiffany Eulalio [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-7084-9646>)
Maintainer: Tiffany Eulalio <tyeulalio@gmail.com>
Built: R 4.5.0; ; 2025-06-05 13:48:32 UTC; windows
