Package: txdbmaker
Title: Tools for making TxDb objects from genomic annotations
Description: A set of tools for making TxDb objects from genomic
        annotations from various sources (e.g. UCSC, Ensembl, and GFF
        files). These tools allow the user to download the genomic
        locations of transcripts, exons, and CDS, for a given assembly,
        and to import them in a TxDb object. TxDb objects are
        implemented in the GenomicFeatures package, together with
        flexible methods for extracting the desired features in
        convenient formats.
biocViews: Infrastructure, DataImport, Annotation, GenomeAnnotation,
        GenomeAssembly, Genetics, Sequencing
URL: https://bioconductor.org/packages/txdbmaker
BugReports: https://github.com/Bioconductor/txdbmaker/issues
Version: 1.6.2
License: Artistic-2.0
Encoding: UTF-8
Authors@R: c(
	person("H.", "Pagès", role=c("aut", "cre"),
		email="hpages.on.github@gmail.com"),
	person("M.", "Carlson", role="aut"),
	person("P.", "Aboyoun", role="aut"),
	person("S.", "Falcon", role="aut"),
	person("M.", "Morgan", role="aut"),
	person("R.", "Castelo", role="ctb"),
	person("M.", "Lawrence", role="ctb"),
	person("I-Hsuan", "Lin", role="ctb"),
	person("J.", "MacDonald", role="ctb"),
	person("M.", "Ramos", role="ctb"),
	person("S.", "Saini", role="ctb"),
	person("L.", "Shepherd", role="ctb"))
Depends: BiocGenerics, S4Vectors (>= 0.47.6), Seqinfo, GenomicRanges
        (>= 1.61.1), GenomicFeatures (>= 1.61.4)
Imports: methods, utils, stats, tools, httr, rjson, DBI, RSQLite (>=
        2.0), IRanges, UCSC.utils (>= 1.6.1), GenomeInfoDb,
        AnnotationDbi, Biobase, BiocIO, rtracklayer, biomaRt (>=
        2.59.1)
Suggests: RMariaDB, ensembldb, GenomeInfoDbData, RUnit, BiocStyle,
        knitr
VignetteBuilder: knitr
Collate: utils.R Ensembl-utils.R findCompatibleMarts.R TxDb-schema.R
        TxDb-CREATE-TABLE-helpers.R makeTxDb.R makeTxDbFromUCSC.R
        makeTxDbFromBiomart.R makeTxDbFromEnsembl.R
        makeTxDbFromGRanges.R makeTxDbFromGFF.R makeFeatureDbFromUCSC.R
        makeTxDbPackage.R zzz.R
Config/pak/sysreqs: make libbz2-dev libicu-dev liblzma-dev libpng-dev
        libxml2-dev libssl-dev xz-utils zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-12-09 00:57:08 UTC
RemoteUrl: https://github.com/bioc/txdbmaker
RemoteRef: RELEASE_3_22
RemoteSha: 75a238d47eca9e474f8483ead4a8ae387a66e69f
NeedsCompilation: no
Packaged: 2026-02-03 08:52:04 UTC; root
Author: H. Pagès [aut, cre],
  M. Carlson [aut],
  P. Aboyoun [aut],
  S. Falcon [aut],
  M. Morgan [aut],
  R. Castelo [ctb],
  M. Lawrence [ctb],
  I-Hsuan Lin [ctb],
  J. MacDonald [ctb],
  M. Ramos [ctb],
  S. Saini [ctb],
  L. Shepherd [ctb]
Maintainer: H. Pagès <hpages.on.github@gmail.com>
Built: R 4.5.2; ; 2026-02-03 08:54:15 UTC; windows
