notameStats
This is the released version of notameStats; for the devel version, see notameStats.
Workflow for non-targeted LC-MS metabolic profiling
Bioconductor version: Release (3.22)
Provides univariate and multivariate statistics for feature prioritization in untargeted LC-MS metabolomics research.
Author: Anton Klåvus [aut, cph]
, Jussi Paananen [aut, cph]
, Oskari Timonen [aut, cph]
, Atte Lihtamo [aut], Vilhelm Suksi [aut, cre]
, Retu Haikonen [aut]
, Leo Lahti [aut]
, Kati Hanhineva [aut]
, Ville Koistinen [ctb]
, Olli Kärkkäinen [ctb]
, Artur Sannikov [ctb]
Maintainer: Vilhelm Suksi <vksuks at utu.fi>
citation("notameStats")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("notameStats")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("notameStats")| Non-targeted metabolomics feature prioritization | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | BatchEffect, BiomedicalInformatics, DataImport, MassSpectrometry, Metabolomics, MultipleComparison, Normalization, Preprocessing, QualityControl, Software, Visualization |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.22 (R-4.5) (< 6 months) |
| License | MIT + file LICENSE |
| Depends | R (>= 4.5.0), SummarizedExperiment |
| Imports | BiocGenerics, BiocParallel, broom, dplyr, methods, notame, stats, tibble, tidyr, utils |
| System Requirements | |
| URL | https://github.com/hanhineva-lab/notameStats |
| Bug Reports | https://github.com/hanhineva-lab/notameStats/issues |
See More
| Suggests | BiocStyle, car, knitr, lmerTest, mixOmics, MuMIn, MUVR2, notameViz, PERMANOVA, PK, randomForest, rmcorr, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | notame, notameViz |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | notameStats_1.0.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | notameStats_1.0.0.tgz |
| macOS Binary (arm64) | notameStats_1.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/notameStats |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/notameStats |
| Bioc Package Browser | https://code.bioconductor.org/browse/notameStats/ |
| Package Short Url | https://bioconductor.org/packages/notameStats/ |
| Package Downloads Report | Download Stats |