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Command output

* checking for working latex ... OK
* using log directory '/loc/biocbuild/1.8d/madman/Rpacks/RBGL.Rcheck'
* using Version 2.3.0 (2006-04-24)
* checking for file 'RBGL/DESCRIPTION' ... OK
* this is package 'RBGL' version '1.8.1'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'RBGL' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for library.dynam ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking Rd files ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking for CRLF line endings in C/C++/Fortran sources/headers ... OK
* checking for portable compilation flags in Makevars ... OK
* creating RBGL-Ex.R ... OK
* checking examples ...Bus Error - core dumped
 ERROR
Running examples in RBGL-Ex.R failed.
The error most likely occurred in:

> ### * FileDep
> 
> flush(stderr()); flush(stdout())
> 
> ### Name: FileDep
> ### Title: FileDep: a graphNEL object representing a file dependency
> ###   dataset example in boost graph library
> ### Aliases: FileDep
> ### Keywords: graphs
> 
> ### ** Examples
> 
> # this is how the graph of data(FileDep) was obtained
> library(graph)
> fd <- file(system.file("XML/FileDep.gxl",package="RBGL"))
> show(fromGXL(fd))
Loading required package: XML
A graphNEL graph with directed edges
Number of Nodes = 15 
Number of Edges = 19 
> if (require(Rgraphviz))
+  {
+  data(FileDep)
+  plot(FileDep)
+  }
Loading required package: Rgraphviz

 *** caught bus error ***
address 19d478c, cause 'invalid alignment'

Traceback:
 1: .Call("Rgraphviz_buildEdgeList", aa, edgemode(graph), subGList,     edgeNames, removed, edgeAttrs, defAttrs, PACKAGE = "Rgraphviz")
 2: buildEdgeList(graph, recipEdges, edgeAttrs, subGList, attrs$edge)
 3: agopen(x, name = name, layout = TRUE, layoutType = y, attrs = attrs,     nodeAttrs = nodeAttrs, edgeAttrs = edgeAttrs, subGList = subGList,     recipEdges = recipEdges)
 4: .local(x, y, ...)
 5: plot(FileDep)
 6: plot(FileDep)
aborting ...