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| Package: pairseqsim |
| Version: 1.6.0 |
| Command: /home/biocbuild/R-2.3.0/bin/R CMD build pairseqsim |
| RetCode: 0 |
| Time: 14.5 seconds |
| Status: OK |
| PackageFile: pairseqsim_1.6.0.tar.gz |
* checking for file 'pairseqsim/DESCRIPTION' ... OK
* preparing 'pairseqsim':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* checking whether 'INDEX' is up-to-date ... NO
* use '--force' to overwrite the existing 'INDEX'
* installing the package to re-build vignettes
* Installing *source* package 'pairseqsim' ...
** libs
gcc -I/home/biocbuild/R-2.3.0/include -I/home/biocbuild/R-2.3.0/include -I/usr/local/include -fpic -g -O2 -std=gnu99 -Wall -c align.c -o align.o
gcc -I/home/biocbuild/R-2.3.0/include -I/home/biocbuild/R-2.3.0/include -I/usr/local/include -fpic -g -O2 -std=gnu99 -Wall -c basic.c -o basic.o
gcc -I/home/biocbuild/R-2.3.0/include -I/home/biocbuild/R-2.3.0/include -I/usr/local/include -fpic -g -O2 -std=gnu99 -Wall -c callalign.c -o callalign.o
gcc -shared -L/usr/local/lib64 -o pairseqsim.so align.o basic.o callalign.o
** R
** data
** inst
** help
>>> Building/Updating help pages for package 'pairseqsim'
Formats: text html latex example
AAAlignment-class text html latex example
AAAlphabet-class text html latex example
AASequence-class text html latex example
AASequence text html latex example
AASequenceList-class text html latex example
EPAM110 text html latex example
Submatrix-class text html latex
listdist-methods text html latex
readFasta-methods text html latex example
salign-methods text html latex example
sequlist text html latex example
testalign-methods text html latex
** building package indices ...
* DONE (pairseqsim)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source files
* checking for empty or unneeded directories
* building 'pairseqsim_1.6.0.tar.gz'