oligo 1.20.4
Benilton Carvalho
| Snapshot Date: 2012-09-23 17:01:39 -0700 (Sun, 23 Sep 2012) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_10/madman/Rpacks/oligo | | Last Changed Rev: 67271 / Revision: 69725 | | Last Changed Date: 2012-07-04 07:44:52 -0700 (Wed, 04 Jul 2012) |
| lamb2 | Linux (openSUSE 11.4) / x86_64 | OK | OK | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | [ OK ] |
| petty | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
install for i386
* installing *source* package 'oligo' ...
** libs
gcc -I"E:/biocbld/bbs-2.10-bioc/R/library/zlibbioc/include" -I"E:/biocbld/BBS-2~1.10-/R/include" -DNDEBUG -I"E:/biocbld/bbs-2.10-bioc/R/library/preprocessCore/include" -O3 -Wall -std=gnu99 -mtune=core2 -c DABG.c -o DABG.o
gcc -I"E:/biocbld/bbs-2.10-bioc/R/library/zlibbioc/include" -I"E:/biocbld/BBS-2~1.10-/R/include" -DNDEBUG -I"E:/biocbld/bbs-2.10-bioc/R/library/preprocessCore/include" -O3 -Wall -std=gnu99 -mtune=core2 -c ParserGzXYS.c -o ParserGzXYS.o
ParserGzXYS.c: In function 'gzread_one_xys':
ParserGzXYS.c:74:54: warning: unused variable 'token' [-Wunused-variable]
gcc -I"E:/biocbld/bbs-2.10-bioc/R/library/zlibbioc/include" -I"E:/biocbld/BBS-2~1.10-/R/include" -DNDEBUG -I"E:/biocbld/bbs-2.10-bioc/R/library/preprocessCore/include" -O3 -Wall -std=gnu99 -mtune=core2 -c ParserXYS.c -o ParserXYS.o
gcc -I"E:/biocbld/bbs-2.10-bioc/R/library/zlibbioc/include" -I"E:/biocbld/BBS-2~1.10-/R/include" -DNDEBUG -I"E:/biocbld/bbs-2.10-bioc/R/library/preprocessCore/include" -O3 -Wall -std=gnu99 -mtune=core2 -c baseProfile.c -o baseProfile.o
gcc -I"E:/biocbld/bbs-2.10-bioc/R/library/zlibbioc/include" -I"E:/biocbld/BBS-2~1.10-/R/include" -DNDEBUG -I"E:/biocbld/bbs-2.10-bioc/R/library/preprocessCore/include" -O3 -Wall -std=gnu99 -mtune=core2 -c basecontent.c -o basecontent.o
gcc -I"E:/biocbld/bbs-2.10-bioc/R/library/zlibbioc/include" -I"E:/biocbld/BBS-2~1.10-/R/include" -DNDEBUG -I"E:/biocbld/bbs-2.10-bioc/R/library/preprocessCore/include" -O3 -Wall -std=gnu99 -mtune=core2 -c chipbackground.c -o chipbackground.o
gcc -I"E:/biocbld/bbs-2.10-bioc/R/library/zlibbioc/include" -I"E:/biocbld/BBS-2~1.10-/R/include" -DNDEBUG -I"E:/biocbld/bbs-2.10-bioc/R/library/preprocessCore/include" -O3 -Wall -std=gnu99 -mtune=core2 -c mas5calls.c -o mas5calls.o
gcc -I"E:/biocbld/bbs-2.10-bioc/R/library/zlibbioc/include" -I"E:/biocbld/BBS-2~1.10-/R/include" -DNDEBUG -I"E:/biocbld/bbs-2.10-bioc/R/library/preprocessCore/include" -O3 -Wall -std=gnu99 -mtune=core2 -c rma2.c -o rma2.o
gcc -I"E:/biocbld/bbs-2.10-bioc/R/library/zlibbioc/include" -I"E:/biocbld/BBS-2~1.10-/R/include" -DNDEBUG -I"E:/biocbld/bbs-2.10-bioc/R/library/preprocessCore/include" -O3 -Wall -std=gnu99 -mtune=core2 -c rma_common.c -o rma_common.o
gcc -I"E:/biocbld/bbs-2.10-bioc/R/library/zlibbioc/include" -I"E:/biocbld/BBS-2~1.10-/R/include" -DNDEBUG -I"E:/biocbld/bbs-2.10-bioc/R/library/preprocessCore/include" -O3 -Wall -std=gnu99 -mtune=core2 -c trimmed.c -o trimmed.o
gcc -shared -s -static-libgcc -o oligo.dll tmp.def DABG.o ParserGzXYS.o ParserXYS.o baseProfile.o basecontent.o chipbackground.o mas5calls.o rma2.o rma_common.o trimmed.o -lgfortran -LE:/biocbld/BBS-2~1.10-/R/bin/i386 -lRlapack -LE:/biocbld/BBS-2~1.10-/R/bin/i386 -lRblas -LE:/biocbld/bbs-2.10-bioc/R/library/zlibbioc/libs/i386 -lzlib1bioc -LE:/biocbld/BBS-2~1.10-/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.10-bioc/meat/oligo.buildbin-libdir/oligo/libs/i386
** R
** inst
** preparing package for lazy loading
Note: in method for 'pm<-' with signature
'object="TilingFeatureSet",subset="ANY",target="ANY",value="array"':
expanding the signature to include omitted arguments in definition: =
"missing"
Note: in method for 'mm<-' with signature
'object="TilingFeatureSet",subset="ANY",target="ANY",value="array"':
expanding the signature to include omitted arguments in definition: =
"missing"
** help
*** installing help indices
** building package indices
** installing vignettes
'primer.Rnw'
** testing if installed package can be loaded
install for x64
* installing *source* package 'oligo' ...
** libs
gcc -m64 -I"E:/biocbld/bbs-2.10-bioc/R/library/zlibbioc/include" -I"E:/biocbld/BBS-2~1.10-/R/include" -DNDEBUG -I"E:/biocbld/bbs-2.10-bioc/R/library/preprocessCore/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c DABG.c -o DABG.o
gcc -m64 -I"E:/biocbld/bbs-2.10-bioc/R/library/zlibbioc/include" -I"E:/biocbld/BBS-2~1.10-/R/include" -DNDEBUG -I"E:/biocbld/bbs-2.10-bioc/R/library/preprocessCore/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c ParserGzXYS.c -o ParserGzXYS.o
ParserGzXYS.c: In function 'gzread_one_xys':
ParserGzXYS.c:74:54: warning: unused variable 'token' [-Wunused-variable]
gcc -m64 -I"E:/biocbld/bbs-2.10-bioc/R/library/zlibbioc/include" -I"E:/biocbld/BBS-2~1.10-/R/include" -DNDEBUG -I"E:/biocbld/bbs-2.10-bioc/R/library/preprocessCore/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c ParserXYS.c -o ParserXYS.o
gcc -m64 -I"E:/biocbld/bbs-2.10-bioc/R/library/zlibbioc/include" -I"E:/biocbld/BBS-2~1.10-/R/include" -DNDEBUG -I"E:/biocbld/bbs-2.10-bioc/R/library/preprocessCore/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c baseProfile.c -o baseProfile.o
gcc -m64 -I"E:/biocbld/bbs-2.10-bioc/R/library/zlibbioc/include" -I"E:/biocbld/BBS-2~1.10-/R/include" -DNDEBUG -I"E:/biocbld/bbs-2.10-bioc/R/library/preprocessCore/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c basecontent.c -o basecontent.o
gcc -m64 -I"E:/biocbld/bbs-2.10-bioc/R/library/zlibbioc/include" -I"E:/biocbld/BBS-2~1.10-/R/include" -DNDEBUG -I"E:/biocbld/bbs-2.10-bioc/R/library/preprocessCore/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c chipbackground.c -o chipbackground.o
gcc -m64 -I"E:/biocbld/bbs-2.10-bioc/R/library/zlibbioc/include" -I"E:/biocbld/BBS-2~1.10-/R/include" -DNDEBUG -I"E:/biocbld/bbs-2.10-bioc/R/library/preprocessCore/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c mas5calls.c -o mas5calls.o
gcc -m64 -I"E:/biocbld/bbs-2.10-bioc/R/library/zlibbioc/include" -I"E:/biocbld/BBS-2~1.10-/R/include" -DNDEBUG -I"E:/biocbld/bbs-2.10-bioc/R/library/preprocessCore/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c rma2.c -o rma2.o
gcc -m64 -I"E:/biocbld/bbs-2.10-bioc/R/library/zlibbioc/include" -I"E:/biocbld/BBS-2~1.10-/R/include" -DNDEBUG -I"E:/biocbld/bbs-2.10-bioc/R/library/preprocessCore/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c rma_common.c -o rma_common.o
gcc -m64 -I"E:/biocbld/bbs-2.10-bioc/R/library/zlibbioc/include" -I"E:/biocbld/BBS-2~1.10-/R/include" -DNDEBUG -I"E:/biocbld/bbs-2.10-bioc/R/library/preprocessCore/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c trimmed.c -o trimmed.o
gcc -m64 -shared -s -static-libgcc -o oligo.dll tmp.def DABG.o ParserGzXYS.o ParserXYS.o baseProfile.o basecontent.o chipbackground.o mas5calls.o rma2.o rma_common.o trimmed.o -lgfortran -LE:/biocbld/BBS-2~1.10-/R/bin/x64 -lRlapack -LE:/biocbld/BBS-2~1.10-/R/bin/x64 -lRblas -LE:/biocbld/bbs-2.10-bioc/R/library/zlibbioc/libs/x64 -lzlib1bioc -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LE:/biocbld/BBS-2~1.10-/R/bin/x64 -lR
installing to E:/biocbld/bbs-2.10-bioc/meat/oligo.buildbin-libdir/oligo/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'oligo' as oligo_1.20.4.zip
* DONE (oligo)