Package: globaltest

Version: 5.7.2

Command: D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --no-vignettes --timings globaltest_5.7.2.tar.gz

StartedAt: 2011-05-09 17:25:32 -0700 (Mon, 09 May 2011)

EndedAt: 2011-05-09 17:28:38 -0700 (Mon, 09 May 2011)

EllapsedTime: 185.5 seconds

RetCode: 0

Status:  OK

CheckDir: globaltest.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/globaltest.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-04-17 r55484)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'globaltest/DESCRIPTION' ... OK
* this is package 'globaltest' version '5.7.2'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'globaltest' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'globaltest' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Creating a new generic function for "sort" in "globaltest"
Creating a new generic function for "model.matrix" in "globaltest"
Creating a new generic function for "coefficients" in "globaltest"
Creating a new generic function for "fitted.values" in "globaltest"
Creating a new generic function for "residuals" in "globaltest"
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'GlobalTest.Rnw' 
   'GlobalTest_deprecated.Rnw' 
** testing if installed package can be loaded

* DONE (globaltest)

name	user	system	elapsed
comparative	3.18	0.00	3.22
diagnostics	0.82	0.00	0.81
genesettesting	0	0	0
goodnessoffit	1.73	0.00	1.99
gt	0.66	0.00	0.65
gt.object-class	0.43	0.01	0.46
gtoptions	0	0	0
mlogit	0.00	0.02	0.01
multtest	0.5	0.0	0.5
v4_checkerboard	0.07	0.01	0.08
v4_geneplot	0.53	0.00	0.53
v4_globaltest	4.22	0.02	4.24
v4_multtest	0.53	0.00	0.53
v4_permutations	1.83	0.02	1.84
v4_regressionplot	1.5	0.0	1.5
v4_sampleplot	0.53	0.00	0.53
v4_sampling	37.54	0.01	37.63