############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/ChIPpeakAnno_3.28.1.tar.gz && rm -rf ChIPpeakAnno.buildbin-libdir && mkdir ChIPpeakAnno.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ChIPpeakAnno.buildbin-libdir ChIPpeakAnno_3.28.1.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL ChIPpeakAnno_3.28.1.zip && rm ChIPpeakAnno_3.28.1.tar.gz ChIPpeakAnno_3.28.1.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 4 15.7M 4 797k 0 0 1248k 0 0:00:12 --:--:-- 0:00:12 1249k 18 15.7M 18 3025k 0 0 1849k 0 0:00:08 0:00:01 0:00:07 1849k 38 15.7M 38 6165k 0 0 2342k 0 0:00:06 0:00:02 0:00:04 2342k 63 15.7M 63 10.0M 0 0 2812k 0 0:00:05 0:00:03 0:00:02 2812k 94 15.7M 94 14.8M 0 0 3277k 0 0:00:04 0:00:04 --:--:-- 3277k 100 15.7M 100 15.7M 0 0 3357k 0 0:00:04 0:00:04 --:--:-- 3682k install for i386 * installing *source* package 'ChIPpeakAnno' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'ChIPpeakAnno' finding HTML links ... done ChIPpeakAnno-deprecated html ChIPpeakAnno-package html EnsDb2GR html ExonPlusUtr.human.GRCh37 html HOT.spots html IDRfilter html Peaks.Ste12.Replicate1 html Peaks.Ste12.Replicate2 html Peaks.Ste12.Replicate3 html TSS.human.GRCh37 html TSS.human.GRCh38 html TSS.human.NCBI36 html TSS.mouse.GRCm38 html TSS.mouse.NCBIM37 html TSS.rat.RGSC3.4 html TSS.rat.Rnor_5.0 html TSS.zebrafish.Zv8 html TSS.zebrafish.Zv9 html TxDb2GR html addAncestors html addGeneIDs html addMetadata html annoGR html annoPeaks html annotatePeakInBatch html annotatedPeak html assignChromosomeRegion html bdp html binOverFeature html binOverGene html binOverRegions html bindist html cntOverlaps html condenseMatrixByColnames html convert2EntrezID html countPatternInSeqs html cumulativePercentage html downstreams html egOrgMap html enrichedGO html enrichmentPlot html estFragmentLength html estLibSize html featureAlignedDistribution html featureAlignedExtendSignal html featureAlignedHeatmap html featureAlignedSignal html findEnhancers html findMotifsInPromoterSeqs html findOverlappingPeaks html findOverlapsOfPeaks html genomicElementDistribution html genomicElementUpSetR html getAllPeakSequence html getAnnotation html getEnrichedGO html getEnrichedPATH html getGO html getGeneSeq html getUniqueGOidCount html getVennCounts html hyperGtest html makeVennDiagram html mergePlusMinusPeaks html metagenePlot html myPeakList html oligoFrequency html oligoSummary html peakPermTest html peaksNearBDP html permPool html pie1 html plotBinOverRegions html preparePool html reCenterPeaks html summarizeOverlapsByBins html summarizePatternInPeaks html tileCount html tileGRanges html toGRanges html translatePattern html wgEncodeTfbsV3 html write2FASTA html xget html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'ChIPpeakAnno' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'ChIPpeakAnno' as ChIPpeakAnno_3.28.1.zip * DONE (ChIPpeakAnno) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'ChIPpeakAnno' successfully unpacked and MD5 sums checked