############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/MADSEQ_1.20.0.tar.gz && rm -rf MADSEQ.buildbin-libdir && mkdir MADSEQ.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MADSEQ.buildbin-libdir MADSEQ_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL MADSEQ_1.20.0.zip && rm MADSEQ_1.20.0.tar.gz MADSEQ_1.20.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 3 1872k 3 74113 0 0 378k 0 0:00:04 --:--:-- 0:00:04 378k 69 1872k 69 1308k 0 0 1098k 0 0:00:01 0:00:01 --:--:-- 1098k 100 1872k 100 1872k 0 0 1257k 0 0:00:01 0:00:01 --:--:-- 1257k install for i386 * installing *source* package 'MADSEQ' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'MADSEQ' finding HTML links ... done MADSEQ-package html MadSeq html aneuploidy_chr18 html deltaBIC html normalizeCoverage html finding level-2 HTML links ... done plotFraction html plotMadSeq html plotMixture html posterior html prepareCoverageGC html prepareHetero html runMadSeq html summary-method html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'MADSEQ' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'MADSEQ' as MADSEQ_1.20.0.zip * DONE (MADSEQ) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'MADSEQ' successfully unpacked and MD5 sums checked