############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf MicrobiotaProcess.buildbin-libdir && mkdir MicrobiotaProcess.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MicrobiotaProcess.buildbin-libdir MicrobiotaProcess_1.6.6.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'MicrobiotaProcess' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading in method for 'taxonomy<-' with signature 'x="MPSE",value="taxonomyTable"': no definition for class "taxonomyTable" Creating a generic function for 'rownames<-' from package 'base' in package 'MicrobiotaProcess' in method for 'get_alltaxadf' with signature '"phyloseq"': no definition for class "phyloseq" in method for 'get_taxadf' with signature '"phyloseq"': no definition for class "phyloseq" in method for 'get_alphaindex' with signature '"phyloseq"': no definition for class "phyloseq" in method for 'get_NRI_NTI' with signature '"phyloseq"': no definition for class "phyloseq" in method for 'get_rarecurve' with signature '"phyloseq"': no definition for class "phyloseq" in method for 'get_upset' with signature '"phyloseq"': no definition for class "phyloseq" in method for 'get_vennlist' with signature '"phyloseq"': no definition for class "phyloseq" in method for 'drop_taxa' with signature '"phyloseq"': no definition for class "phyloseq" ** help *** installing help indices converting help for package 'MicrobiotaProcess' finding HTML links ... done ImportDada2 html ImportQiime2 html MPSE-accessors html MPSE-class html MPSE html alphasample-class html as.MPSE html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/MicrobiotaProcess.buildbin-libdir/00LOCK-MicrobiotaProcess/00new/MicrobiotaProcess/help/as.mpse.html as.phyloseq html as.treedata html build_tree html convert_to_treedata html data-hmp_aerobiosis_small html data-kostic2012crc html data-test_otu_data html diffAnalysisClass-class html diff_analysis html dr_extract html drop_taxa html extract_binary_offspring html generalizedFC html get_NRI_NTI-methods html get_alltaxadf html get_alphaindex html get_clust html get_coord html get_count html get_dist html get_mean_median html get_pca html get_pcoa html get_pvalue html get_rarecurve html get_sampledflist html get_taxadf html get_upset html get_varct html get_vennlist html ggbartax html ggbox html ggclust html ggdiffbox html ggdiffclade html ggdifftaxbar html ggeffectsize html ggordpoint html ggrarecurve html finding level-2 HTML links ... done mouse.time.mpse html mp_adonis-methods html mp_aggregate-methods html mp_aggregate_clade-methods html mp_anosim-methods html mp_balance_clade-methods html mp_cal_abundance-methods html mp_cal_alpha-methods html mp_cal_cca-methods html mp_cal_clust-methods html mp_cal_dca-methods html mp_cal_dist-methods html mp_cal_nmds-methods html mp_cal_pca-methods html mp_cal_pcoa-methods html mp_cal_pd_metric-methods html mp_cal_rarecurve-methods html mp_cal_rda-methods html mp_cal_upset-methods html mp_cal_venn-methods html mp_decostand-methods html mp_diff_analysis-methods html mp_diff_clade-methods html mp_envfit-methods html mp_extract_abundance-methods html mp_extract_assays-methods html mp_extract_dist-methods html mp_extract_feature-methods html mp_extract_internal_attr-methods html mp_extract_rarecurve-methods html mp_extract_refseq-methods html mp_extract_sample-methods html mp_extract_taxonomy-methods html mp_extract_tree-methods html mp_filter_taxa-methods html mp_fortify html mp_import_metaphlan html mp_import_qiime html mp_mantel-methods html mp_mrpp-methods html mp_plot_abundance-methods html mp_plot_alpha-methods html mp_plot_diff_res-methods html mp_plot_dist-methods html mp_plot_ord-methods html mp_plot_rarecurve-methods html mp_plot_upset-methods html mp_plot_venn-methods html mp_rrarefy-methods html mp_select_as_tip-methods html mp_stat_taxa-methods html multi_compare html ordplotClass-class html pcasample-class html pcoa-class html prcomp-class html print html read_qza html reexports html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/MicrobiotaProcess.buildbin-libdir/00LOCK-MicrobiotaProcess/00new/MicrobiotaProcess/help/as.treedata.html set_scale_theme html show-methods html split_data html split_str_to_list html theme_taxbar html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'MicrobiotaProcess' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'MicrobiotaProcess' as MicrobiotaProcess_1.6.6.zip * DONE (MicrobiotaProcess)