############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/SIAMCAT_1.14.0.tar.gz && rm -rf SIAMCAT.buildbin-libdir && mkdir SIAMCAT.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SIAMCAT.buildbin-libdir SIAMCAT_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL SIAMCAT_1.14.0.zip && rm SIAMCAT_1.14.0.tar.gz SIAMCAT_1.14.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 18 11.8M 18 2230k 0 0 2211k 0 0:00:05 0:00:01 0:00:04 2212k 43 11.8M 43 5298k 0 0 2677k 0 0:00:04 0:00:01 0:00:03 2677k 63 11.8M 63 7722k 0 0 2592k 0 0:00:04 0:00:02 0:00:02 2592k 90 11.8M 90 10.7M 0 0 2766k 0 0:00:04 0:00:03 0:00:01 2765k 100 11.8M 100 11.8M 0 0 2853k 0 0:00:04 0:00:04 --:--:-- 2854k install for i386 * installing *source* package 'SIAMCAT' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'SIAMCAT' finding HTML links ... done SIAMCAT-package html accessSlot html add.meta.pred html assign-associations html assign-data_split html assign-eval_data html assign-filt_feat html assign-label html assign-meta html assign-model_list html assign-norm_feat html assign-orig_feat html assign-physeq html assign-pred_matrix html assoc_param-methods html associations-methods html check.associations html check.confounders html create.data.split html create.label html data_split-methods html eval_data-methods html evaluate.predictions html feat.crc.zeller html feature_type-methods html feature_weights-methods html filt_feat-methods html filt_params-methods html filter.features html filter.label html get.component.classes html get.filt_feat.matrix html get.norm_feat.matrix html get.orig_feat.matrix html label-methods html make.predictions html meta-methods html meta.crc.zeller html model.evaluation.plot html model.interpretation.plot html model_list-methods html model_type-methods html models-methods html norm_feat-methods html norm_params-methods html normalize.features html orig_feat-methods html parse.label.header html physeq-methods html pred_matrix-methods html read.label html read.lefse html select.samples html show-methods html siamcat-class html siamcat html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/SIAMCAT.buildbin-libdir/00LOCK-SIAMCAT/00new/SIAMCAT/help/siamcat.html siamcat.to.lefse html siamcat.to.maaslin html siamcat_example html summarize.features html finding level-2 HTML links ... done train.model html validate.data html weight_matrix-methods html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'SIAMCAT' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'SIAMCAT' as SIAMCAT_1.14.0.zip * DONE (SIAMCAT) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'SIAMCAT' successfully unpacked and MD5 sums checked