############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/StructuralVariantAnnotation_1.10.1.tar.gz && rm -rf StructuralVariantAnnotation.buildbin-libdir && mkdir StructuralVariantAnnotation.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=StructuralVariantAnnotation.buildbin-libdir StructuralVariantAnnotation_1.10.1.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL StructuralVariantAnnotation_1.10.1.zip && rm StructuralVariantAnnotation_1.10.1.tar.gz StructuralVariantAnnotation_1.10.1.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 34 632k 34 221k 0 0 733k 0 --:--:-- --:--:-- --:--:-- 732k 100 632k 100 632k 0 0 751k 0 --:--:-- --:--:-- --:--:-- 751k install for i386 * installing *source* package 'StructuralVariantAnnotation' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'StructuralVariantAnnotation' finding HTML links ... done StructuralVariantAnnotation html align_breakpoints html breakendRanges html breakpointGRangesToVCF html breakpointRanges html breakpointgr2bedpe html calculateReferenceHomology html countBreakpointOverlaps html elementExtract html extractBreakpointSequence html extractReferenceSequence html findBreakpointOverlaps html findInsDupOverlaps html findTransitiveCalls html hasPartner html isStructural html isSymbolic html numtDetect html pairs2breakpointgr html partner html rtDetect html simpleEventLength html simpleEventType html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'StructuralVariantAnnotation' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'StructuralVariantAnnotation' as StructuralVariantAnnotation_1.10.1.zip * DONE (StructuralVariantAnnotation) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'StructuralVariantAnnotation' successfully unpacked and MD5 sums checked