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### Running command:
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###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:TimiRGeN.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings TimiRGeN_1.4.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.14-bioc/meat/TimiRGeN.Rcheck’
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘TimiRGeN/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘TimiRGeN’ version ‘1.4.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘TimiRGeN’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... NOTE
  Note: found 3 marked UTF-8 strings
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
quickReg       7.639  0.809  10.047
wikiMrna       6.864  0.762  11.638
quickPathwayTC 6.383  0.700   9.981
clusterList    5.651  0.711   9.786
quickTC        5.174  0.562   6.792
quickHClust    4.769  0.634   6.279
quickTCPred    4.526  0.528   5.871
quickDendro    4.342  0.586   5.838
addIds         4.344  0.459   6.315
quickDMap      4.278  0.499   5.670
multiReg       4.317  0.442   5.544
linearRegr     4.246  0.499   8.321
quickCrossCorr 4.283  0.452   5.553
eNames         4.027  0.380   5.282
makeDynamic    3.943  0.434   5.280
diffExpressRes 3.877  0.378   8.066
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
  Loading required package: IRanges
  Loading required package: GenomeInfoDb
  
  > test_check(package = "TimiRGeN")
  [ FAIL 1 | WARN 49 | SKIP 0 | PASS 124 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure (test_quickNet.R:14:3): net should be 10 long ───────────────────────
  length(metadata(net)[[1]]) not equal to 10.
  1/1 mismatches
  [1] 6 - 10 == -4
  
  [ FAIL 1 | WARN 49 | SKIP 0 | PASS 124 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 ERROR, 1 NOTE
See
  ‘/home/biocbuild/bbs-3.14-bioc/meat/TimiRGeN.Rcheck/00check.log’
for details.