############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:gpls.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings gpls_1.66.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/gpls.Rcheck' * using R version 4.1.3 (2022-03-10) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'gpls/DESCRIPTION' ... OK * this is package 'gpls' version '1.66.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'gpls' can be installed ... WARNING Found the following significant warnings: Note: break used in wrong context: no loop is visible See 'C:/Users/biocbuild/bbs-3.14-bioc/meat/gpls.Rcheck/00install.out' for details. Information on the location(s) of code generating the 'Note's can be obtained by re-running with environment variable R_KEEP_PKG_SOURCE set to 'yes'. * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE prepare_Rd: glpls1a.Rd:26-28: Dropping empty section \details prepare_Rd: glpls1a.Rd:47: Dropping empty section \note prepare_Rd: glpls1a.cv.error.Rd:24-26: Dropping empty section \details prepare_Rd: glpls1a.cv.error.Rd:42: Dropping empty section \note prepare_Rd: glpls1a.logit.all.Rd:28-30: Dropping empty section \details prepare_Rd: glpls1a.logit.all.Rd:45: Dropping empty section \note prepare_Rd: glpls1a.mlogit.Rd:27-29: Dropping empty section \details prepare_Rd: glpls1a.mlogit.Rd:47: Dropping empty section \note prepare_Rd: glpls1a.mlogit.cv.error.Rd:24: Dropping empty section \details prepare_Rd: glpls1a.mlogit.cv.error.Rd:40: Dropping empty section \note prepare_Rd: glpls1a.train.test.error.Rd:27-29: Dropping empty section \details prepare_Rd: glpls1a.train.test.error.Rd:46: Dropping empty section \note * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 WARNING, 1 NOTE See 'C:/Users/biocbuild/bbs-3.14-bioc/meat/gpls.Rcheck/00check.log' for details.