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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/methylPipe_1.28.0.tar.gz && rm -rf methylPipe.buildbin-libdir && mkdir methylPipe.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=methylPipe.buildbin-libdir methylPipe_1.28.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL methylPipe_1.28.0.zip && rm methylPipe_1.28.0.tar.gz methylPipe_1.28.0.zip
###
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install for i386

* installing *source* package 'methylPipe' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c R_init_methylPipe.c -o R_init_methylPipe.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c binning.c -o binning.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o methylPipe.dll tmp.def R_init_methylPipe.o binning.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/methylPipe.buildbin-libdir/00LOCK-methylPipe/00new/methylPipe/libs/i386
** R
** exec
** inst
** byte-compile and prepare package for lazy loading
No methods found in package 'BiocGenerics' for requests: 'clusterApplyLB', 'clusterEvalQ' when loading 'methylPipe'
** help
*** installing help indices
  converting help for package 'methylPipe'
    finding HTML links ... done
    BSdata-class                            html  
    finding level-2 HTML links ... done

    BSdataSet-class                         html  
    BSprepare                               html  
    GEcollection-class                      html  
    GElist-class                            html  
    chiCombP                                html  
    consolidateDMRs                         html  
    extractBinGRanges                       html  
    findDMR                                 html  
    findPMDs                                html  
    getCpos                                 html  
    getCposDensity                          html  
    mCsmoothing                             html  
    mapBSdata2GRanges                       html  
    meth.call                               html  
    methstats                               html  
    methylPipe-package                      html  
    plotMeth                                html  
    pool.reads                              html  
    process.hmc                             html  
    profileDNAmetBin                        html  
    splitChrs                               html  
    tabixdata2GR                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
No methods found in package 'BiocGenerics' for requests: 'clusterApplyLB', 'clusterEvalQ' when loading 'methylPipe'
** testing if installed package can be loaded from final location
No methods found in package 'BiocGenerics' for requests: 'clusterApplyLB', 'clusterEvalQ' when loading 'methylPipe'
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'methylPipe' ...
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c R_init_methylPipe.c -o R_init_methylPipe.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c binning.c -o binning.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o methylPipe.dll tmp.def R_init_methylPipe.o binning.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/methylPipe.buildbin-libdir/methylPipe/libs/x64
** testing if installed package can be loaded
No methods found in package 'BiocGenerics' for requests: 'clusterApplyLB', 'clusterEvalQ' when loading 'methylPipe'
* MD5 sums
packaged installation of 'methylPipe' as methylPipe_1.28.0.zip
* DONE (methylPipe)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'methylPipe' successfully unpacked and MD5 sums checked