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###
### Running command:
###
###   rm -rf midasHLA.buildbin-libdir && mkdir midasHLA.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=midasHLA.buildbin-libdir midasHLA_1.2.0.tar.gz
###
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install for i386

* installing *source* package 'midasHLA' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'midasHLA'
    finding HTML links ... done
    HWETest                                 html  
    LRTest                                  html  
    MiDAS-class                             html  
    finding level-2 HTML links ... done

    MiDAS_tut_HLA                           html  
    MiDAS_tut_KIR                           html  
    MiDAS_tut_object                        html  
    MiDAS_tut_pheno                         html  
    aaVariationToCounts                     html  
    adjustPValues                           html  
    allele_frequencies                      html  
    analyzeAssociations                     html  
    analyzeConditionalAssociations          html  
    applyInheritanceModel                   html  
    as.data.frame.MiDAS                     html  
    backquote                               html  
    characterMatches                        html  
    checkAlleleFormat                       html  
    checkColDataFormat                      html  
    checkHlaCallsFormat                     html  
    checkKirCallsFormat                     html  
    checkKirGenesFormat                     html  
    checkStatisticalModel                   html  
    colnamesMatches                         html  
    convertAlleleToVariable                 html  
    countsToVariables                       html  
    dfToExperimentMat                       html  
    dict_dist_grantham                      html  
    distGrantham                            html  
    experimentMatToDf                       html  
    filterByFrequency                       html  
    filterByOmnibusGroups                   html  
    filterByVariables                       html  
    filterExperimentByFrequency             html  
    filterExperimentByVariables             html  
    filterListByElements                    html  
    formatResults                           html  
    getAAFrequencies                        html  
    getAlleleResolution                     html  
    getAllelesForAA                         html  
    getExperimentFrequencies                html  
    getExperimentPopulationMultiplicator    html  
    getExperiments                          html  
    getFrequencies                          html  
    getFrequencyMask                        html  
    getHlaCalls                             html  
    getHlaCallsGenes                        html  
    getHlaFrequencies                       html  
    getHlaKirInteractions                   html  
    getKIRFrequencies                       html  
    getKirCalls                             html  
    getObjectDetails                        html  
    getOmnibusGroups                        html  
    getPlaceholder                          html  
    getReferenceFrequencies                 html  
    getVariableAAPos                        html  
    hasTidyMethod                           html  
    hlaAlignmentGrantham                    html  
    hlaCallsGranthamDistance                html  
    hlaCallsToCounts                        html  
    hlaToAAVariation                        html  
    hlaToVariable                           html  
    isCharacterOrNULL                       html  
    isClass                                 html  
    isClassOrNULL                           html  
    isCountOrNULL                           html  
    isCountsOrZeros                         html  
    isExperimentCountsOrZeros               html  
    isExperimentInheritanceModelApplicable
                                            html  
    isFlagOrNULL                            html  
    isNumberOrNULL                          html  
    isStringOrNULL                          html  
    isTRUEorFALSE                           html  
    iterativeLRT                            html  
    iterativeModel                          html  
    kableResults                            html  
    kir_frequencies                         html  
    lapply_tryCatch                         html  
    listMiDASDictionaries                   html  
    midasToWide                             html  
    objectHasPlaceholder                    html  
    omnibusTest                             html  
    prepareMiDAS                            html  
    prepareMiDAS_hla_NK_ligands             html  
    prepareMiDAS_hla_aa                     html  
    prepareMiDAS_hla_alleles                html  
    prepareMiDAS_hla_custom                 html  
    prepareMiDAS_hla_divergence             html  
    prepareMiDAS_hla_g_groups               html  
    prepareMiDAS_hla_het                    html  
    prepareMiDAS_hla_kir_interactions       html  
    prepareMiDAS_hla_supertypes             html  
    prepareMiDAS_kir_custom                 html  
    prepareMiDAS_kir_genes                  html  
    prepareMiDAS_kir_haplotypes             html  
    readHlaAlignments                       html  
    readHlaCalls                            html  
    readKirCalls                            html  
    reduceAlleleResolution                  html  
    reduceHlaCalls                          html  
    runMiDAS                                html  
    runMiDASGetVarsFreq                     html  
    stringMatches                           html  
    summariseAAPosition                     html  
    updateModel                             html  
    validateFrequencyCutoffs                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'midasHLA' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'midasHLA' as midasHLA_1.2.0.zip
* DONE (midasHLA)