############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/minfi_1.40.0.tar.gz && rm -rf minfi.buildbin-libdir && mkdir minfi.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=minfi.buildbin-libdir minfi_1.40.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL minfi_1.40.0.zip && rm minfi_1.40.0.tar.gz minfi_1.40.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 176k 100 176k 0 0 665k 0 --:--:-- --:--:-- --:--:-- 667k install for i386 * installing *source* package 'minfi' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'minfi' finding HTML links ... done DelayedArray_utils html GenomicMethylSet-class html GenomicRatioSet-class html IlluminaMethylationAnnotation-class html IlluminaMethylationManifest-class html MethylSet-class html finding level-2 HTML links ... done RGChannelSet-class html RatioSet-class html blockFinder html bumphunter html combineArrays html compartments html controlStripPlot html convertArray html cpgCollapse html densityBeanPlot html densityPlot html detectionP html dmpFinder html estimateCellCounts html fixMethOutliers html gaphunter html getAnnotation html getGenomicRatioSetFromGEO html getQC html getSex html logit2 html makeGenomicRatioSetFromMatrix html mapToGenome-methods html mdsPlot html minfi-defunct html minfi-deprecated html minfi-package html minfiQC html plotBetasByType html plotCpg html preprocessFunnorm html preprocessIllumina html preprocessNoob html preprocessQuantile html preprocessRaw html preprocessSwan html qcReport html ratioConvert-methods html read.metharray html read.metharray.exp html read.metharray.sheet html readGEORawFile html readTCGA html subsetByLoci html utils html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'minfi' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'minfi' as minfi_1.40.0.zip * DONE (minfi) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'minfi' successfully unpacked and MD5 sums checked