############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/monaLisa_1.0.0.tar.gz && rm -rf monaLisa.buildbin-libdir && mkdir monaLisa.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=monaLisa.buildbin-libdir monaLisa_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL monaLisa_1.0.0.zip && rm monaLisa_1.0.0.tar.gz monaLisa_1.0.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 13 2707k 13 367k 0 0 752k 0 0:00:03 --:--:-- 0:00:03 753k 68 2707k 68 1867k 0 0 1284k 0 0:00:02 0:00:01 0:00:01 1284k 100 2707k 100 2707k 0 0 1482k 0 0:00:01 0:00:01 --:--:-- 1482k install for i386 * installing *source* package 'monaLisa' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'monaLisa' finding HTML links ... done annoSeqlogo html bin html calcBinnedKmerEnr html calcBinnedMotifEnrHomer html calcBinnedMotifEnrR html dot-calcKmerEnrichment html dot-calcMotifEnrichment html dot-calculateGCweight html dot-checkDfValidity html dot-checkIfSeqsAreEqualLength html dot-cons2matrix html dot-defineBackground html dot-filterSeqs html dot-glmnetRandomizedLasso html dot-iterativeNormForKmers html dot-normForKmers html dumpJaspar html findHomer html findMotifHits-methods html getColsByBin html getKmerFreq html finding level-2 HTML links ... done getSetZeroBin html homerToPFMatrixList html monaLisa-package html motifKmerSimilarity html motifSimilarity html parseHomerOutput html plotBinDensity html plotBinDiagnostics html plotBinHist html plotBinScatter html plotMotifHeatmaps html plotSelectionProb html plotStabilityPaths html prepareHomer html randLassoStabSel html sampleRandomRegions html seqLogoGrob html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'monaLisa' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'monaLisa' as monaLisa_1.0.0.zip * DONE (monaLisa) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'monaLisa' successfully unpacked and MD5 sums checked