############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/segmenter_1.0.0.tar.gz && rm -rf segmenter.buildbin-libdir && mkdir segmenter.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=segmenter.buildbin-libdir segmenter_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL segmenter_1.0.0.zip && rm segmenter_1.0.0.tar.gz segmenter_1.0.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 2 3923k 2 99687 0 0 510k 0 0:00:07 --:--:-- 0:00:07 509k 48 3923k 48 1911k 0 0 1622k 0 0:00:02 0:00:01 0:00:01 1622k 100 3923k 100 3923k 0 0 2018k 0 0:00:01 0:00:01 --:--:-- 2018k install for i386 * installing *source* package 'segmenter' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'segmenter' finding HTML links ... done accessors html annotate_segments html binarize_bam html binarize_bed html compare_models html count_reads_ranges html dot-Binarize html dot-LearnModel html emissions_file html enrichment_files html get_frequency html get_width html learn_model html merge_segments_bins html methods html model_file html overlap_files html plot_heatmap html range_bins html range_counts html read_bam_file html read_bins_file html read_cellmark_file html read_chromsize_file html read_emissions_file html read_enrichment_file html read_model_file html read_overlap_file html read_segements_file html read_transitions_file html segmentation html segments_files html test_obj html test_objs html tidy_ranges html transitions_file html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'segmenter' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'segmenter' as segmenter_1.0.0.zip * DONE (segmenter) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'segmenter' successfully unpacked and MD5 sums checked