############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MuData ### ############################################################################## ############################################################################## * checking for file ‘MuData/DESCRIPTION’ ... OK * preparing ‘MuData’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘Blood-CITE-seq.Rmd’ using rmarkdown Quitting from lines 105-108 [unnamed-chunk-7] (Blood-CITE-seq.Rmd) Error: processing vignette 'Blood-CITE-seq.Rmd' failed with diagnostics: function 'as_cholmod_sparse' not provided by package 'Matrix' --- failed re-building ‘Blood-CITE-seq.Rmd’ --- re-building ‘Cord-Blood-CITE-seq.Rmd’ using rmarkdown 2024-04-16 22:30:23.678 R[11587:449957753] XType: Using static font registry. --- finished re-building ‘Cord-Blood-CITE-seq.Rmd’ --- re-building ‘Getting-Started.Rmd’ using rmarkdown --- finished re-building ‘Getting-Started.Rmd’ SUMMARY: processing the following file failed: ‘Blood-CITE-seq.Rmd’ Error: Vignette re-building failed. Execution halted