############################################################################## ############################################################################## ### ### Running command: ### ### /home/hpages/bbs-3.18-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data affy ### ############################################################################## ############################################################################## * checking for file ‘affy/DESCRIPTION’ ... OK * preparing ‘affy’: * checking DESCRIPTION meta-information ... OK * cleaning src * running ‘cleanup’ * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘affy.Rnw’ using Sweave Loading required package: BiocGenerics Attaching package: ‘BiocGenerics’ The following objects are masked from ‘package:stats’: IQR, mad, sd, var, xtabs The following objects are masked from ‘package:base’: Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append, as.data.frame, basename, cbind, colnames, dirname, do.call, duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted, lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table, tapply, union, unique, unsplit, which.max, which.min Loading required package: Biobase Welcome to Bioconductor Vignettes contain introductory material; view with 'browseVignettes()'. To cite Bioconductor, see 'citation("Biobase")', and for packages 'citation("pkgname")'. Error: processing vignette 'affy.Rnw' failed with diagnostics: chunk 3 Error in library(affydata) : there is no package called ‘affydata’ --- failed re-building ‘affy.Rnw’ --- re-building ‘builtinMethods.Rnw’ using Sweave --- finished re-building ‘builtinMethods.Rnw’ --- re-building ‘customMethods.Rnw’ using Sweave Error: processing vignette 'customMethods.Rnw' failed with diagnostics: chunk 3 Error in library(affydata) : there is no package called ‘affydata’ --- failed re-building ‘customMethods.Rnw’ --- re-building ‘vim.Rnw’ using Sweave --- finished re-building ‘vim.Rnw’ SUMMARY: processing the following files failed: ‘affy.Rnw’ ‘customMethods.Rnw’ Error: Vignette re-building failed. Execution halted