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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:dittoSeq.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings dittoSeq_1.16.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.19-bioc/meat/dittoSeq.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘dittoSeq/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘dittoSeq’ version ‘1.16.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘dittoSeq’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License stub is invalid DCF.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) Darken.Rd:10: Lost braces
    10 | \item{colors}{the color(s) input. Can be a list of colors, for example, /code{dittoColors()}.}
       |                                                                              ^
checkRd: (-1) Lighten.Rd:10: Lost braces
    10 | \item{colors}{the color(s) input. Can be a list of colors, for example, /code{dittoColors()}.}
       |                                                                              ^
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                              user system elapsed
dittoPlot                   21.292  0.259  27.134
dittoHex                    20.522  0.223  27.575
multi_dittoDimPlotVaryCells 17.306  0.355  23.432
dittoDimPlot                16.032  0.288  21.382
dittoFreqPlot               15.362  0.150  19.618
dittoScatterPlot            13.503  0.153  17.985
dittoDotPlot                12.264  0.133  15.655
multi_dittoPlot             11.684  0.205  16.118
gene                         8.620  0.353  11.559
multi_dittoDimPlot           8.833  0.096  12.110
dittoHeatmap                 7.289  0.227  10.239
dittoPlotVarsAcrossGroups    6.978  0.157  10.008
dittoBarPlot                 6.669  0.248   9.060
Simulate                     5.034  0.312   6.515
demux.calls.summary          4.702  0.087   5.991
importDemux                  4.324  0.062   5.821
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/Users/biocbuild/bbs-3.19-bioc/meat/dittoSeq.Rcheck/00check.log’
for details.