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###
### Running command:
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###   E:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD INSTALL gINTomics
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* installing to library 'E:/biocbuild/bbs-3.19-bioc/R/library'
* installing *source* package 'gINTomics' ...
** using staged installation
** R
[2024-10-16 16:59:54] [TRACE]   [OmnipathR] Reading JSON from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR/cache.json` (encoding: UTF-8).
[2024-10-16 16:59:54] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-10-16 16:59:54] [INFO]    [OmnipathR] Initialized cache: `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`.
[2024-10-16 16:59:54] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2024-10-16 16:59:54] [TRACE]   [OmnipathR] Cache is at `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`.
[2024-10-16 16:59:54] [TRACE]   [OmnipathR] Contains 1 files.
[2024-10-16 16:59:54] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2024-10-16 16:59:54] [TRACE]   [OmnipathR] Reading JSON from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR/cache.json` (encoding: UTF-8).
[2024-10-16 16:59:54] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-10-16 16:59:54] [SUCCESS] [OmnipathR] Removing all cache contents from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`.
[2024-10-16 16:59:54] [TRACE]   [OmnipathR] Pandoc version: `2.7.3`.
[2024-10-16 16:59:54] [TRACE]   [OmnipathR] Reading JSON from `E:/biocbuild/bbs-3.19-bioc/R/library/OmnipathR/db/db_def.json` (encoding: UTF-8).
[2024-10-16 16:59:54] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-10-16 16:59:54] [TRACE]   [OmnipathR] Reading JSON from `E:/biocbuild/bbs-3.19-bioc/R/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8).
[2024-10-16 16:59:54] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-10-16 16:59:54] [TRACE]   [OmnipathR] Reading JSON from `E:/biocbuild/bbs-3.19-bioc/R/library/OmnipathR/internal/urls.json` (encoding: UTF-8).
[2024-10-16 16:59:54] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-10-16 16:59:54] [TRACE]   [OmnipathR] Reading JSON from `E:/biocbuild/bbs-3.19-bioc/R/library/OmnipathR/internal/id_types.json` (encoding: UTF-8).
[2024-10-16 16:59:54] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-10-16 16:59:54] [TRACE]   [OmnipathR] Cache locked: FALSE



** data
** inst
** byte-compile and prepare package for lazy loading
[2024-10-16 17:00:35] [TRACE]   [OmnipathR] Reading JSON from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR/cache.json` (encoding: UTF-8).
[2024-10-16 17:00:35] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-10-16 17:00:35] [INFO]    [OmnipathR] Initialized cache: `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`.
[2024-10-16 17:00:35] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2024-10-16 17:00:35] [TRACE]   [OmnipathR] Cache is at `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`.
[2024-10-16 17:00:35] [TRACE]   [OmnipathR] Contains 1 files.
[2024-10-16 17:00:35] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2024-10-16 17:00:35] [TRACE]   [OmnipathR] Reading JSON from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR/cache.json` (encoding: UTF-8).
[2024-10-16 17:00:35] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-10-16 17:00:35] [SUCCESS] [OmnipathR] Removing all cache contents from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`.
[2024-10-16 17:00:35] [TRACE]   [OmnipathR] Pandoc version: `2.7.3`.
[2024-10-16 17:00:35] [TRACE]   [OmnipathR] Reading JSON from `E:/biocbuild/bbs-3.19-bioc/R/library/OmnipathR/db/db_def.json` (encoding: UTF-8).
[2024-10-16 17:00:35] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-10-16 17:00:35] [TRACE]   [OmnipathR] Reading JSON from `E:/biocbuild/bbs-3.19-bioc/R/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8).
[2024-10-16 17:00:35] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-10-16 17:00:35] [TRACE]   [OmnipathR] Reading JSON from `E:/biocbuild/bbs-3.19-bioc/R/library/OmnipathR/internal/urls.json` (encoding: UTF-8).
[2024-10-16 17:00:35] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-10-16 17:00:35] [TRACE]   [OmnipathR] Reading JSON from `E:/biocbuild/bbs-3.19-bioc/R/library/OmnipathR/internal/id_types.json` (encoding: UTF-8).
[2024-10-16 17:00:35] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-10-16 17:00:35] [TRACE]   [OmnipathR] Cache locked: FALSE
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
[2024-10-16 17:01:07] [TRACE]   [OmnipathR] Reading JSON from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR/cache.json` (encoding: UTF-8).
[2024-10-16 17:01:07] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-10-16 17:01:07] [INFO]    [OmnipathR] Initialized cache: `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`.
[2024-10-16 17:01:07] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2024-10-16 17:01:07] [TRACE]   [OmnipathR] Cache is at `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`.
[2024-10-16 17:01:07] [TRACE]   [OmnipathR] Contains 1 files.
[2024-10-16 17:01:07] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2024-10-16 17:01:07] [TRACE]   [OmnipathR] Reading JSON from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR/cache.json` (encoding: UTF-8).
[2024-10-16 17:01:07] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-10-16 17:01:07] [SUCCESS] [OmnipathR] Removing all cache contents from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`.
[2024-10-16 17:01:08] [TRACE]   [OmnipathR] Pandoc version: `2.7.3`.
[2024-10-16 17:01:08] [TRACE]   [OmnipathR] Reading JSON from `E:/biocbuild/bbs-3.19-bioc/R/library/OmnipathR/db/db_def.json` (encoding: UTF-8).
[2024-10-16 17:01:08] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-10-16 17:01:08] [TRACE]   [OmnipathR] Reading JSON from `E:/biocbuild/bbs-3.19-bioc/R/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8).
[2024-10-16 17:01:08] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-10-16 17:01:08] [TRACE]   [OmnipathR] Reading JSON from `E:/biocbuild/bbs-3.19-bioc/R/library/OmnipathR/internal/urls.json` (encoding: UTF-8).
[2024-10-16 17:01:08] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-10-16 17:01:08] [TRACE]   [OmnipathR] Reading JSON from `E:/biocbuild/bbs-3.19-bioc/R/library/OmnipathR/internal/id_types.json` (encoding: UTF-8).
[2024-10-16 17:01:08] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-10-16 17:01:08] [TRACE]   [OmnipathR] Cache locked: FALSE
** testing if installed package can be loaded from final location
[2024-10-16 17:01:24] [TRACE]   [OmnipathR] Reading JSON from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR/cache.json` (encoding: UTF-8).
[2024-10-16 17:01:24] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-10-16 17:01:24] [INFO]    [OmnipathR] Initialized cache: `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`.
[2024-10-16 17:01:24] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2024-10-16 17:01:24] [TRACE]   [OmnipathR] Cache is at `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`.
[2024-10-16 17:01:24] [TRACE]   [OmnipathR] Contains 1 files.
[2024-10-16 17:01:24] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2024-10-16 17:01:24] [TRACE]   [OmnipathR] Reading JSON from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR/cache.json` (encoding: UTF-8).
[2024-10-16 17:01:24] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-10-16 17:01:24] [SUCCESS] [OmnipathR] Removing all cache contents from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`.
[2024-10-16 17:01:24] [TRACE]   [OmnipathR] Pandoc version: `2.7.3`.
[2024-10-16 17:01:24] [TRACE]   [OmnipathR] Reading JSON from `E:/biocbuild/bbs-3.19-bioc/R/library/OmnipathR/db/db_def.json` (encoding: UTF-8).
[2024-10-16 17:01:24] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-10-16 17:01:24] [TRACE]   [OmnipathR] Reading JSON from `E:/biocbuild/bbs-3.19-bioc/R/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8).
[2024-10-16 17:01:24] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-10-16 17:01:24] [TRACE]   [OmnipathR] Reading JSON from `E:/biocbuild/bbs-3.19-bioc/R/library/OmnipathR/internal/urls.json` (encoding: UTF-8).
[2024-10-16 17:01:24] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-10-16 17:01:24] [TRACE]   [OmnipathR] Reading JSON from `E:/biocbuild/bbs-3.19-bioc/R/library/OmnipathR/internal/id_types.json` (encoding: UTF-8).
[2024-10-16 17:01:24] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-10-16 17:01:24] [TRACE]   [OmnipathR] Cache locked: FALSE
** testing if installed package keeps a record of temporary installation path
* DONE (gINTomics)