############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BiocOncoTK ### ############################################################################## ############################################################################## * checking for file ‘BiocOncoTK/DESCRIPTION’ ... OK * preparing ‘BiocOncoTK’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘BiocOncoTK.Rmd’ using rmarkdown Quitting from BiocOncoTK.Rmd:17-31 [setup] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `library()`: ! there is no package called 'restfulSE' --- Backtrace: ▆ 1. ├─base::suppressPackageStartupMessages(...) 2. │ └─base::withCallingHandlers(expr, packageStartupMessage = function(c) tryInvokeRestart("muffleMessage")) 3. ├─base::suppressMessages(...) 4. │ └─base::withCallingHandlers(...) 5. └─base::library(restfulSE) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'BiocOncoTK.Rmd' failed with diagnostics: there is no package called 'restfulSE' --- failed re-building ‘BiocOncoTK.Rmd’ --- re-building ‘curatedMSIData.Rmd’ using rmarkdown --- finished re-building ‘curatedMSIData.Rmd’ --- re-building ‘maptcga.Rmd’ using rmarkdown --- finished re-building ‘maptcga.Rmd’ SUMMARY: processing the following file failed: ‘BiocOncoTK.Rmd’ Error: Vignette re-building failed. Execution halted