############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data GEOmetadb ### ############################################################################## ############################################################################## * checking for file ‘GEOmetadb/DESCRIPTION’ ... OK * preparing ‘GEOmetadb’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘GEOmetadb.Rmd’ using rmarkdown trying URL 'https://gbnci.cancer.gov/geo/GEOmetadb_demo.sqlite.gz' Content type 'application/x-gzip' length 20889492 bytes (19.9 MB) ====================== downloaded 9.1 MB Quitting from GEOmetadb.Rmd:88-98 [unnamed-chunk-3] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `download.file()`: ! download from 'https://gbnci.cancer.gov/geo/GEOmetadb_demo.sqlite.gz' failed --- Backtrace: ▆ 1. └─GEOmetadb::getSQLiteFile(...) 2. └─utils::download.file(url_geo, destfile = localfile, mode = "wb") ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'GEOmetadb.Rmd' failed with diagnostics: download from 'https://gbnci.cancer.gov/geo/GEOmetadb_demo.sqlite.gz' failed --- failed re-building ‘GEOmetadb.Rmd’ SUMMARY: processing the following file failed: ‘GEOmetadb.Rmd’ Error: Vignette re-building failed. Execution halted