############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r ReactomeGSA -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data ReactomeGSA ### ############################################################################## ############################################################################## * checking for file 'ReactomeGSA/DESCRIPTION' ... OK * preparing 'ReactomeGSA': * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'analysing-scRNAseq.Rmd' using rmarkdown Quitting from analysing-scRNAseq.Rmd:86-93 [unnamed-chunk-5] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: ! unable to find an inherited method for function 'pathways' for signature 'x = "NULL"' --- Backtrace: ▆ 1. └─ReactomeGSA::pathways(gsva_result) 2. └─methods (local) ``(``, ``, ``) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'analysing-scRNAseq.Rmd' failed with diagnostics: unable to find an inherited method for function 'pathways' for signature 'x = "NULL"' --- failed re-building 'analysing-scRNAseq.Rmd' --- re-building 'reanalysing-public-data.Rmd' using rmarkdown --- finished re-building 'reanalysing-public-data.Rmd' --- re-building 'using-reactomegsa.Rmd' using rmarkdown --- finished re-building 'using-reactomegsa.Rmd' SUMMARY: processing the following file failed: 'analysing-scRNAseq.Rmd' Error: Vignette re-building failed. Execution halted