############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data SparseArray ### ############################################################################## ############################################################################## * checking for file ‘SparseArray/DESCRIPTION’ ... OK * preparing ‘SparseArray’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘SparseArray_objects.Rmd’ using rmarkdown Quitting from SparseArray_objects.Rmd:450-456 [unnamed-chunk-30] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `rhdf5::H5Fopen()`: ! HDF5. File accessibility. Unable to open file. --- Backtrace: ▆ 1. └─HDF5Array::TENxMatrix(hub[["EH1039"]], group = "mm10") 2. └─HDF5Array::TENxMatrixSeed(filepath, group) 3. └─HDF5Array::H5SparseMatrixSeed(filepath, group) 4. └─HDF5Array:::.check_group(filepath, group) 5. └─HDF5Array:::h5exists(filepath, group) 6. └─HDF5Array:::.H5Fopen(filepath, flags = "H5F_ACC_RDONLY") 7. ├─base::suppressMessages(rhdf5::H5Fopen(name, flags = flags, fapl = fapl)) 8. │ └─base::withCallingHandlers(...) 9. └─rhdf5::H5Fopen(name, flags = flags, fapl = fapl) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'SparseArray_objects.Rmd' failed with diagnostics: HDF5. File accessibility. Unable to open file. --- failed re-building ‘SparseArray_objects.Rmd’ SUMMARY: processing the following file failed: ‘SparseArray_objects.Rmd’ Error: Vignette re-building failed. Execution halted