############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 coMET ### ############################################################################## ############################################################################## * checking for file ‘coMET/DESCRIPTION’ ... OK * preparing ‘coMET’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘coMET.Rnw’ using knitr Quitting from coMET.Rnw:336-345 [cometwebPlot] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `errorHandler()`: ! Internal Server Error --- Backtrace: x 1. \-coMET::comet.web(...) 2. \-coMET:::create.tracks.web(config.var, gbl.var) 3. \-coMET::chromatinHMMAll_UCSC(...) 4. \-coMET::chromatinHMMOne_UCSC(...) 5. +-rtracklayer::getTable(ucscTableQuery(gen, range = mygrange, table = table.name)) 6. \-rtracklayer::getTable(ucscTableQuery(gen, range = mygrange, table = table.name)) 7. \-rtracklayer (local) .local(object, ...) 8. +-restfulr::read(url$getData$track, query) 9. \-restfulr::read(url$getData$track, query) 10. +-base::tryCatch(...) 11. | \-base (local) tryCatchList(expr, classes, parentenv, handlers) 12. | \-base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 13. | \-base (local) doTryCatch(return(expr), name, parentenv, handler) 14. \-x@protocol$read(x, cacheInfo) 15. \-restfulr:::handleResponse(content, reader, cache.info, x@errorHandler) 16. \-restfulr (local) errorHandler(responseError) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'coMET.Rnw' failed with diagnostics: Internal Server Error --- failed re-building ‘coMET.Rnw’ SUMMARY: processing the following file failed: ‘coMET.Rnw’ Error: Vignette re-building failed. Execution halted