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### Running command:
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###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust
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* checking for file ‘immunoClust/DESCRIPTION’ ... OK
* preparing ‘immunoClust’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘immunoClust.Rnw’ using Sweave
Loading required package: flowCore
filtered from above:318
filtered from below:0

cluster 1(N=151) has 2 sub-cluster at 2 (12), ICL=149<>26
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (12), ICL=0<>26
Model Refinement takes 0.017 mins(max 1: 0.017)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 7 iterations

cluster 2(N=93) has 3 sub-cluster at 3 (7), ICL=108<>30
split 2 into 3 clusters
cluster 1(N=209) has 2 sub-cluster at 2 (9), ICL=46<>30
split 1 into 2 clusters
cluster 1(N=209) has 2 sub-cluster at 2 (9), ICL=0<>30
Model Refinement takes 0.033 mins(max 1: 0.017)
Fit Model 2 of (6/10) K=2->5 N=605
EM 5 takes 0 mins, 9 iterations

cluster 4(N=58) has 5 sub-cluster at 7 (98), ICL=43<>34
split 4 into 5 clusters
cluster 5(N=49) has 3 sub-cluster at 3 (8), ICL=24<>34
cluster 3(N=71) has 3 sub-cluster at 3 (21), ICL=17<>34
cluster 2(N=18) has 2 sub-cluster at 2 (100), ICL=9.8<>34
cluster 1(N=413) has 7 sub-cluster at 7 (30), ICL=3.1<>34
cluster 1(N=413) has 7 sub-cluster at 7 (30), ICL=0<>34
Model Refinement takes 0.13 mins(max 1: 0.05)
Fit Model 3 of (6/10) K=5->9 N=1210
EM 5 takes 0 mins, 6 iterations

cluster 5(N=113) has 2 sub-cluster at 2 (8), ICL=72<>37
split 5 into 2 clusters
cluster 2(N=30) has 2 sub-cluster at 2 (6), ICL=17<>37
cluster 3(N=154) has 5 sub-cluster at 5 (22), ICL=16<>37
cluster 4(N=103) has 7 sub-cluster at 7 (34), ICL=14<>37
cluster 1(N=817) has 3 sub-cluster at 3 (7), ICL=6.4<>37
cluster 1(N=817) has 3 sub-cluster at 3 (7), ICL=0<>37
Model Refinement takes 0.13 mins(max 1: 0.05)
Fit Model 4 of (6/10) K=5->6 N=2420
EM 6 takes 0 mins, 9 iterations

cluster 2(N=70) has 3 sub-cluster at 3 (30), ICL=63<>41
split 2 into 3 clusters
cluster 6(N=134) has 3 sub-cluster at 3 (7), ICL=23<>41
cluster 5(N=108) has 3 sub-cluster at 3 (17), ICL=16<>41
cluster 3(N=297) has 6 sub-cluster at 6 (52), ICL=14<>41
cluster 4(N=237) has 8 sub-cluster at 8 (40), ICL=12<>41
cluster 2(N=70) has 3 sub-cluster at 3 (30), ICL=0<>41
Model Refinement takes 0.17 mins(max 1: 0.067)
Fit Model 5 of (6/10) K=6->8 N=4841
EM 8 takes 0 mins, 6 iterations

cluster 3(N=35) has 3 sub-cluster at 3 (37), ICL=49<>45
split 3 into 3 clusters
cluster 1(N=3186) has 3 sub-cluster at 3 (8), ICL=38<>45
cluster 8(N=278) has 3 sub-cluster at 3 (7), ICL=30<>45
cluster 7(N=194) has 3 sub-cluster at 3 (14), ICL=27<>45
cluster 2(N=88) has 2 sub-cluster at 2 (12), ICL=21<>45
cluster 6(N=486) has 3 sub-cluster at 3 (12), ICL=12<>45
cluster 5(N=580) has 2 sub-cluster at 2 (6), ICL=11<>45
cluster 4(N=23) has 2 sub-cluster at 2 (100), ICL=3.5<>45
cluster 1(N=3186) has 3 sub-cluster at 3 (8), ICL=0<>45
Model Refinement takes 0.15 mins(max 1: 0.05)
Fit Model 6 of (6/10) K=8->10 N=9682
EM 9 takes 0 mins, 6 iterations

cluster 1(N=6478) has 3 sub-cluster at 3 (9), ICL=105<>48
split 1 into 3 clusters
cluster 9(N=557) has 3 sub-cluster at 3 (11), ICL=67<>48
split 9 into 3 clusters
cluster 2(N=157) has 4 sub-cluster at 4 (18), ICL=45<>48
cluster 8(N=392) has 3 sub-cluster at 3 (34), ICL=38<>48
cluster 6(N=1121) has 2 sub-cluster at 2 (6), ICL=37<>48
cluster 4(N=25) has 2 sub-cluster at 2 (100), ICL=31<>48
cluster 5(N=59) has 2 sub-cluster at 2 (7), ICL=30<>48
cluster 7(N=908) has 3 sub-cluster at 3 (12), ICL=29<>48
cluster 3(N=53) has 2 sub-cluster at 3 (24), ICL=7.6<>48
cluster 1(N=6478) has 3 sub-cluster at 3 (9), ICL=0<>48
Model Refinement takes 0.23 mins(max 1: 0.083)
Fit Model 7 of (6/10) K=9->13 N=9682
EM 13 takes 0.033 mins, 25 iterations

cluster 9(N=897) has 2 sub-cluster at 2 (26), ICL=54<>48
split 9 into 2 clusters
cluster 4(N=157) has 4 sub-cluster at 4 (18), ICL=45<>48
cluster 10(N=391) has 2 sub-cluster at 2 (8), ICL=37<>48
cluster 8(N=1121) has 2 sub-cluster at 2 (6), ICL=37<>48
cluster 7(N=60) has 2 sub-cluster at 2 (9), ICL=30<>48
cluster 13(N=90) has 2 sub-cluster at 2 (11), ICL=17<>48
cluster 11(N=372) has 7 sub-cluster at 7 (23), ICL=16<>48
cluster 5(N=53) has 3 sub-cluster at 4 (23), ICL=13<>48
cluster 3(N=305) has 2 sub-cluster at 2 (14), ICL=11<>48
cluster 12(N=170) has 5 sub-cluster at 7 (30), ICL=9.4<>48
cluster 6(N=19) has 2 sub-cluster at 2 (6), ICL=0.39<>48
cluster 3(N=305) has 2 sub-cluster at 2 (14), ICL=0<>48
Model Refinement takes 0.33 mins(max 1: 0.067)
Fit Model 8 of (6/10) K=13->14 N=9682
EM 14 takes 0 mins, 3 iterations

cluster 4(N=157) has 4 sub-cluster at 4 (18), ICL=45<>48
cluster 11(N=391) has 2 sub-cluster at 2 (8), ICL=37<>48
cluster 8(N=1121) has 2 sub-cluster at 2 (6), ICL=37<>48
cluster 7(N=61) has 2 sub-cluster at 2 (9), ICL=31<>48
cluster 14(N=88) has 4 sub-cluster at 4 (42), ICL=25<>48
cluster 12(N=373) has 2 sub-cluster at 2 (6), ICL=11<>48
cluster 3(N=305) has 2 sub-cluster at 2 (14), ICL=10<>48
cluster 13(N=170) has 5 sub-cluster at 7 (30), ICL=9.4<>48
cluster 5(N=53) has 3 sub-cluster at 4 (13), ICL=7.9<>48
cluster 6(N=19) has 2 sub-cluster at 2 (7), ICL=0.41<>48
cluster 3(N=305) has 2 sub-cluster at 2 (14), ICL=0<>48
Model Refinement takes 0.35 mins(max 1: 0.067)
Fit Model 9 of (6/10) K=14->14 N=9682
EM 14 takes 0.017 mins, 3 iterations

Process completed at9

Major Iteration (Trans) (6/4) takes 1.6 mins
filtered from above:318
filtered from below:0

cluster 1(N=151) has 2 sub-cluster at 2 (8), ICL=155<>22
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (8), ICL=0<>22
Model Refinement takes 0.017 mins(max 1: 0.017)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 9 iterations

cluster 2(N=95) has 3 sub-cluster at 3 (9), ICL=109<>25
split 2 into 3 clusters
cluster 1(N=210) has 2 sub-cluster at 2 (6), ICL=30<>25
split 1 into 2 clusters
cluster 1(N=210) has 2 sub-cluster at 2 (6), ICL=0<>25
Model Refinement takes 0.017 mins(max 2: 0.017)
Fit Model 2 of (6/10) K=2->5 N=605
EM 5 takes 0 mins, 18 iterations

cluster 3(N=55) has 2 sub-cluster at 2 (10), ICL=44<>28
split 3 into 2 clusters
cluster 5(N=60) has 3 sub-cluster at 3 (16), ICL=19<>28
cluster 1(N=419) has 2 sub-cluster at 2 (5), ICL=17<>28
cluster 2(N=14) has 2 sub-cluster at 2 (100), ICL=9.7<>28
cluster 4(N=58) has 2 sub-cluster at 2 (8), ICL=7.2<>28
cluster 1(N=419) has 2 sub-cluster at 2 (5), ICL=0<>28
Model Refinement takes 0.05 mins(max 1: 0.033)
Fit Model 3 of (6/10) K=5->6 N=1210
EM 6 takes 0 mins, 11 iterations

cluster 2(N=40) has 3 sub-cluster at 3 (18), ICL=73<>31
split 2 into 3 clusters
cluster 4(N=45) has 2 sub-cluster at 2 (100), ICL=41<>31
split 4 into 2 clusters
cluster 3(N=76) has 4 sub-cluster at 4 (29), ICL=25<>31
cluster 6(N=140) has 2 sub-cluster at 2 (7), ICL=25<>31
cluster 5(N=89) has 5 sub-cluster at 5 (30), ICL=19<>31
cluster 2(N=40) has 3 sub-cluster at 3 (18), ICL=0<>31
Model Refinement takes 0.067 mins(max 1: 0.017)
Fit Model 4 of (6/10) K=6->9 N=2420
EM 7 takes 0.017 mins, 6 iterations

cluster 6(N=238) has 2 sub-cluster at 2 (7), ICL=47<>34
split 6 into 2 clusters
cluster 5(N=115) has 6 sub-cluster at 6 (54), ICL=45<>34
split 5 into 6 clusters
cluster 7(N=272) has 2 sub-cluster at 2 (7), ICL=39<>34
split 7 into 2 clusters
cluster 4(N=142) has 5 sub-cluster at 5 (18), ICL=21<>34
cluster 2(N=17) has 2 sub-cluster at 2 (19), ICL=14<>34
cluster 3(N=36) has 2 sub-cluster at 2 (10), ICL=12<>34
cluster 2(N=17) has 2 sub-cluster at 2 (19), ICL=0<>34
Model Refinement takes 0.12 mins(max 1: 0.05)
Fit Model 5 of (6/10) K=7->14 N=4841
EM 13 takes 0.017 mins, 16 iterations

cluster 1(N=3227) has 4 sub-cluster at 4 (9), ICL=44<>37
split 1 into 4 clusters
cluster 5(N=97) has 7 sub-cluster at 7 (61), ICL=29<>37
cluster 4(N=260) has 2 sub-cluster at 2 (5), ICL=29<>37
cluster 3(N=66) has 4 sub-cluster at 4 (16), ICL=25<>37
cluster 11(N=26) has 2 sub-cluster at 2 (6), ICL=22<>37
cluster 6(N=74) has 4 sub-cluster at 4 (29), ICL=18<>37
cluster 13(N=206) has 2 sub-cluster at 2 (42), ICL=18<>37
cluster 10(N=457) has 7 sub-cluster at 7 (38), ICL=13<>37
cluster 7(N=28) has 2 sub-cluster at 2 (9), ICL=11<>37
cluster 8(N=11) has 2 sub-cluster at 2 (100), ICL=1.1<>37
cluster 1(N=3227) has 4 sub-cluster at 4 (9), ICL=0<>37
Model Refinement takes 0.2 mins(max 1: 0.067)
Fit Model 6 of (6/10) K=13->16 N=9682
EM 13 takes 0.05 mins, 20 iterations

cluster 7(N=563) has 3 sub-cluster at 3 (13), ICL=71<>40
split 7 into 3 clusters
cluster 10(N=909) has 4 sub-cluster at 4 (10), ICL=31<>40
cluster 11(N=58) has 2 sub-cluster at 2 (12), ICL=31<>40
cluster 6(N=122) has 4 sub-cluster at 4 (35), ICL=25<>40
cluster 13(N=371) has 2 sub-cluster at 3 (11), ICL=19<>40
cluster 9(N=106) has 5 sub-cluster at 8 (41), ICL=13<>40
cluster 1(N=327) has 2 sub-cluster at 2 (10), ICL=10<>40
cluster 8(N=328) has 6 sub-cluster at 6 (20), ICL=10<>40
cluster 5(N=72) has 2 sub-cluster at 4 (10), ICL=2.5<>40
cluster 1(N=327) has 2 sub-cluster at 2 (10), ICL=0<>40
Model Refinement takes 0.35 mins(max 2: 0.05)
Fit Model 7 of (6/10) K=13->15 N=9682
EM 15 takes 0 mins, 6 iterations

cluster 12(N=899) has 3 sub-cluster at 3 (11), ICL=31<>40
cluster 13(N=59) has 2 sub-cluster at 2 (10), ICL=30<>40
cluster 6(N=122) has 4 sub-cluster at 4 (36), ICL=25<>40
cluster 9(N=91) has 4 sub-cluster at 4 (16), ICL=23<>40
cluster 5(N=71) has 6 sub-cluster at 7 (25), ICL=20<>40
cluster 15(N=377) has 2 sub-cluster at 3 (5), ICL=18<>40
cluster 8(N=371) has 5 sub-cluster at 6 (20), ICL=17<>40
cluster 11(N=105) has 5 sub-cluster at 6 (23), ICL=15<>40
cluster 7(N=165) has 7 sub-cluster at 8 (31), ICL=15<>40
cluster 1(N=323) has 7 sub-cluster at 7 (41), ICL=12<>40
cluster 10(N=328) has 7 sub-cluster at 8 (18), ICL=9.4<>40
cluster 1(N=323) has 7 sub-cluster at 7 (41), ICL=0<>40
Model Refinement takes 0.4 mins(max 3: 0.067)
Fit Model 8 of (6/10) K=15->15 N=9682
EM 15 takes 0.017 mins, 3 iterations

Process completed at8

Major Iteration (Trans) (6/4) takes 1.3 mins
Fit Model 1 of 10 with 8 clusters
=> results in  8 clusters
Fit Model 2 of 10 with 21 clusters
=> results in  13 clusters
Fit Model 3 of 10 with 23 clusters
=> results in  19 clusters
Fit Model 4 of 10 with 26 clusters
=> results in  21 clusters
Fit Model 5 of 10 with 25 clusters
=> results in  21 clusters
Error: processing vignette 'immunoClust.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'immunoClust.tex' failed.
LaTeX errors:
! LaTeX Error: File `inputenx.sty' not found.

Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)

! Emergency stop.
<read *> 
         
l.15 ^^M
        
!  ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘immunoClust.Rnw’

SUMMARY: processing the following file failed:
  ‘immunoClust.Rnw’

Error: Vignette re-building failed.
Execution halted