############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data netOmics ### ############################################################################## ############################################################################## * checking for file ‘netOmics/DESCRIPTION’ ... OK * preparing ‘netOmics’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘netOmics.Rmd’ using rmarkdown Quitting from netOmics.Rmd:209-215 [graph.rna] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `filter.cluster.df()`: ! object 'block' not found --- Backtrace: ▆ 1. ├─timeOmics::getCluster(cluster.info, user.block = "RNA") 2. └─timeOmics:::getCluster.cluster.df(cluster.info, user.block = "RNA") 3. └─timeOmics:::filter.cluster.df(...) 4. ├─dplyr::filter(X.filter, block %in% user.block) 5. ├─timeOmics:::filter.cluster.df(X.filter, block %in% user.block) 6. └─block %in% user.block ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'netOmics.Rmd' failed with diagnostics: object 'block' not found --- failed re-building ‘netOmics.Rmd’ SUMMARY: processing the following file failed: ‘netOmics.Rmd’ Error: Vignette re-building failed. Execution halted