############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data pairedGSEA ### ############################################################################## ############################################################################## * checking for file ‘pairedGSEA/DESCRIPTION’ ... OK * preparing ‘pairedGSEA’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘User-Guide.Rmd’ using rmarkdown Quitting from User-Guide.Rmd:325-335 [scatter] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `plot_ora()`: ! No over-represented gene sets found. --- Backtrace: ▆ 1. └─pairedGSEA::plot_ora(...) 2. └─base::stopifnot(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'User-Guide.Rmd' failed with diagnostics: No over-represented gene sets found. --- failed re-building ‘User-Guide.Rmd’ SUMMARY: processing the following file failed: ‘User-Guide.Rmd’ Error: Vignette re-building failed. Execution halted