############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BUSpaRse ### ############################################################################## ############################################################################## * checking for file ‘BUSpaRse/DESCRIPTION’ ... OK * preparing ‘BUSpaRse’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘sparse-matrix.Rmd’ using rmarkdown tar: Error opening archive: Unrecognized archive format Quitting from sparse-matrix.Rmd:42-46 [unnamed-chunk-3] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `normalizePath()`: ! path[1]="./out_hgmm100": No such file or directory --- Backtrace: ▆ 1. └─BUSpaRse::transcript2gene(...) 2. └─base::normalizePath(kallisto_out_path, mustWork = TRUE) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'sparse-matrix.Rmd' failed with diagnostics: path[1]="./out_hgmm100": No such file or directory --- failed re-building ‘sparse-matrix.Rmd’ --- re-building ‘tr2g.Rmd’ using rmarkdown --- finished re-building ‘tr2g.Rmd’ SUMMARY: processing the following file failed: ‘sparse-matrix.Rmd’ Error: Vignette re-building failed. Execution halted