############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data CNORfuzzy ### ############################################################################## ############################################################################## * checking for file ‘CNORfuzzy/DESCRIPTION’ ... OK * preparing ‘CNORfuzzy’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘CNORfuzzy-vignette.Rnw’ using Sweave Loading required package: CellNOptR Loading required package: RBGL Loading required package: graph Loading required package: BiocGenerics Loading required package: generics Attaching package: ‘generics’ The following objects are masked from ‘package:base’: as.difftime, as.factor, as.ordered, intersect, is.element, setdiff, setequal, union Attaching package: ‘BiocGenerics’ The following objects are masked from ‘package:stats’: IQR, mad, sd, var, xtabs The following objects are masked from ‘package:base’: Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append, as.data.frame, basename, cbind, colnames, dirname, do.call, duplicated, eval, evalq, get, grep, grepl, is.unsorted, lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply, saveRDS, table, tapply, unique, unsplit, which.max, which.min Loading required package: RCurl Loading required package: Rgraphviz Loading required package: grid Loading required package: XML Attaching package: ‘XML’ The following object is masked from ‘package:graph’: addNode Loading required package: ggplot2 Loading required package: rmarkdown Loading required package: nloptr Error: processing vignette 'CNORfuzzy-vignette.Rnw' failed with diagnostics: chunk 7 (label = quickstartPlotModel) Error in buildEdgeList(graph, recipEdges, edgeAttrs, subGList, attrs$edge) : no slot of name "name" for this object of class "pEdge" --- failed re-building ‘CNORfuzzy-vignette.Rnw’ SUMMARY: processing the following file failed: ‘CNORfuzzy-vignette.Rnw’ Error: Vignette re-building failed. Execution halted