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###
### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data SCArray.sat
###
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##############################################################################


* checking for file ‘SCArray.sat/DESCRIPTION’ ... OK
* preparing ‘SCArray.sat’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘SCArray.sat.Rmd’ using rmarkdown

  |                                                                      
  |                                                                |   0%
  |                                                                      
  |================================================================| 100%

Quitting from SCArray.sat.Rmd:78-101 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! non-numeric argument to binary operator
---
Backtrace:
     ▆
  1. ├─Seurat::ScaleData(d)
  2. └─Seurat:::ScaleData.Seurat(d)
  3.   ├─Seurat::ScaleData(...)
  4.   └─Seurat:::ScaleData.Assay(...)
  5.     ├─SeuratObject::SetAssayData(...)
  6.     ├─SCArray.sat:::SetAssayData.SCArrayAssay(...)
  7.     │ └─SeuratObject::IsMatrixEmpty(new.data)
  8.     ├─Seurat::ScaleData(...)
  9.     └─SCArray.sat:::ScaleData.SC_GDSMatrix(...)
 10.       ├─BiocGenerics::lapply(...)
 11.       └─base::lapply(...)
 12.         └─SCArray.sat (local) FUN(X[[i]], ...)
 13.           └─SCArray.sat:::.x_row_scale(m, do.center, do.scale, scale.max)
 14.             ├─SCArray::scRowMeanVar(x, na.rm = TRUE)
 15.             └─SCArray::scRowMeanVar(x, na.rm = TRUE)
 16.               └─SCArray:::.x_row_mean_var(x, na.rm, ...)
 17.                 └─SCArray:::.parallel_col_reduce(...)
 18.                   └─DelayedArray::blockReduce(...)
 19.                     └─DelayedArray::gridReduce(...)
 20.                       └─DelayedArray (local) FUN(viewport, init, ...)
 21.                         └─S4Arrays::read_block(x, viewport, as.sparse = as.sparse)
 22.                           └─S4Arrays:::.read_block(x, viewport, as.sparse = as.sparse)
 23.                             ├─SparseArray::read_block_as_sparse(x, viewport)
 24.                             └─SparseArray::read_block_as_sparse(x, viewport)
 25.                               ├─SparseArray::extract_sparse_array(x, Nindex)
 26.                               └─DelayedArray::extract_sparse_array(x, Nindex)
 27.                                 ├─SparseArray::extract_sparse_array(x@seed, index)
 28.                                 └─DelayedArray::extract_sparse_array(x@seed, index)
 29.                                   ├─SparseArray::extract_sparse_array(x@seed, index)
 30.                                   └─DelayedArray::extract_sparse_array(x@seed, index)
 31.                                     ├─SparseArray::extract_sparse_array(x@seed, seed_index)
 32.                                     └─DelayedArray::extract_sparse_array(x@seed, seed_index)
 33.                                       ├─BiocGenerics::do.call(x@OP, c(Largs, list(svt), Rargs))
 34.                                       └─base::do.call(x@OP, c(Largs, list(svt), Rargs))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'SCArray.sat.Rmd' failed with diagnostics:
non-numeric argument to binary operator
--- failed re-building ‘SCArray.sat.Rmd’

SUMMARY: processing the following file failed:
  ‘SCArray.sat.Rmd’

Error: Vignette re-building failed.
Execution halted