############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data UCSC.utils ### ############################################################################## ############################################################################## * checking for file ‘UCSC.utils/DESCRIPTION’ ... OK * preparing ‘UCSC.utils’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘UCSC.utils.Rmd’ using rmarkdown Quitting from UCSC.utils.Rmd:75-78 [fetch_UCSC_track_data] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `.check_response_status()`: ! [HTTP 500] mm9/cytoBandIdeo: unknown UCSC genome/primary_table (or https://api.genome.ucsc.edu is down?) --- Backtrace: ▆ 1. └─UCSC.utils::fetch_UCSC_track_data("mm9", "cytoBandIdeo") 2. └─UCSC.utils:::API_get_track_data(genome, primary_table, api.url = api.url) 3. └─UCSC.utils:::.query_API(...) 4. └─UCSC.utils:::.check_response_status(response, fallback_errmsg) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'UCSC.utils.Rmd' failed with diagnostics: [HTTP 500] mm9/cytoBandIdeo: unknown UCSC genome/primary_table (or https://api.genome.ucsc.edu is down?) --- failed re-building ‘UCSC.utils.Rmd’ SUMMARY: processing the following file failed: ‘UCSC.utils.Rmd’ Error: Vignette re-building failed. Execution halted