##############################################################################
##############################################################################
###
### Running command:
###
###   E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL eiR
###
##############################################################################
##############################################################################


* installing to library 'E:/biocbuild/bbs-3.21-bioc/R/library'
* installing *source* package 'eiR' ...
** this is package 'eiR' version '1.47.0'
** using staged installation
** libs
using C++ compiler: 'G__~1.EXE (GCC) 13.3.0'
g++ -std=gnu++17  -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -DR_NO_REMAP -c optimFunctions.cc -o optimFunctions.o
optimFunctions.cc: In function 'SEXPREC* calcF(SEXP, SEXP, SEXP)':
optimFunctions.cc:40:17: error: 'length' was not declared in this scope
   40 |         int k = length(xS); //length of result vector
      |                 ^~~~~~
In file included from optimFunctions.cc:2:
optimFunctions.cc:91:31: error: 'allocVector' was not declared in this scope; did you mean 'Rf_allocVector'?
   91 |         SEXP result = PROTECT(allocVector(REALSXP, 1));
      |                               ^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/include/Rinternals.h:388:36: note: in definition of macro 'PROTECT'
  388 | #define PROTECT(s)      Rf_protect(s)
      |                                    ^
optimFunctions.cc: In function 'SEXPREC* calcG(SEXP, SEXP, SEXP)':
optimFunctions.cc:99:17: error: 'length' was not declared in this scope
   99 |         int k = length(xS); //length of result vector
      |                 ^~~~~~
optimFunctions.cc:102:31: error: 'allocVector' was not declared in this scope; did you mean 'Rf_allocVector'?
  102 |         SEXP result = PROTECT(allocVector(REALSXP, k));
      |                               ^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/include/Rinternals.h:388:36: note: in definition of macro 'PROTECT'
  388 | #define PROTECT(s)      Rf_protect(s)
      |                                    ^
make: *** [E:/biocbuild/bbs-3.21-bioc/R/etc/x64/Makeconf:294: optimFunctions.o] Error 1
ERROR: compilation failed for package 'eiR'
* removing 'E:/biocbuild/bbs-3.21-bioc/R/library/eiR'