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### Running command:
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###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:hca.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings hca_1.15.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.21-bioc/meat/hca.Rcheck’
* using R Under development (unstable) (2025-01-20 r87609)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.1 LTS
* using session charset: UTF-8
* checking for file ‘hca/DESCRIPTION’ ... OK
* this is package ‘hca’ version ‘1.15.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘hca’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... ERROR
Running examples in ‘hca-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: bundles
> ### Title: HCA Bundle Querying
> ### Aliases: bundles bundles_facets bundles_default_columns bundles_detail
> 
> ### ** Examples
> 
> title <- paste(
+     "Tabula Muris: Transcriptomic characterization of 20 organs and",
+     "tissues from Mus musculus at single cell resolution"
+ )
> filters <- filters( projectTitle = list(is = title) )
Warning in open.connection(con, "rb") :
  cannot open URL 'https://service.azul.data.humancellatlas.org/openapi': HTTP status was '403 Forbidden'
Error in open.connection(con, "rb") : 
  cannot open the connection to 'https://service.azul.data.humancellatlas.org/openapi'
Calls: filters ... parse_and_simplify -> parseJSON -> parse_con -> open -> open.connection
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
    2.   └─hca::filters()
    3.     └─hca:::.filters_validate(filters_list)
    4.       └─hca::facet_options()
    5.         └─hca:::.hca_openapi()
    6.           └─jsonlite::read_json(api)
    7.             └─jsonlite::parse_json(...)
    8.               └─jsonlite:::parse_and_simplify(...)
    9.                 └─jsonlite:::parseJSON(txt, bigint_as_char)
   10.                   └─jsonlite:::parse_con(txt, bigint_as_char)
   11.                     ├─base::open(con, "rb")
   12.                     └─base::open.connection(con, "rb")
  
  [ FAIL 12 | WARN 12 | SKIP 1 | PASS 119 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
  ...
--- re-building ‘hca_manifest_vignette.Rmd’ using rmarkdown

Quitting from lines 71-76 [unnamed-chunk-3] (hca_manifest_vignette.Rmd)
Error: processing vignette 'hca_manifest_vignette.Rmd' failed with diagnostics:
cannot open the connection to 'https://service.azul.data.humancellatlas.org/openapi'
--- failed re-building ‘hca_manifest_vignette.Rmd’

--- re-building ‘hca_vignette.Rmd’ using rmarkdown

Quitting from lines 68-69 [unnamed-chunk-2] (hca_vignette.Rmd)
Error: processing vignette 'hca_vignette.Rmd' failed with diagnostics:
cannot open the connection to 'https://service.azul.data.humancellatlas.org/openapi'
--- failed re-building ‘hca_vignette.Rmd’

SUMMARY: processing the following files failed:
  ‘hca_manifest_vignette.Rmd’ ‘hca_vignette.Rmd’

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... OK
* DONE

Status: 3 ERRORs
See
  ‘/home/biocbuild/bbs-3.21-bioc/meat/hca.Rcheck/00check.log’
for details.