############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data igvShiny ### ############################################################################## ############################################################################## * checking for file ‘igvShiny/DESCRIPTION’ ... OK * preparing ‘igvShiny’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘igvShiny.Rmd’ using rmarkdown Quitting from igvShiny.Rmd:102-138 [unnamed-chunk-8] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `curl::curl_fetch_memory()`: ! Timeout was reached [gladki.pl]: Connection timed out after 10002 milliseconds --- Backtrace: ▆ 1. ├─igvShiny::parseAndValidateGenomeSpec(...) 2. │ ├─base::stopifnot(exists.function(fasta)) 3. │ └─igvShiny (local) exists.function(fasta) 4. │ ├─httr::http_error(x, ...) 5. │ └─httr:::http_error.character(x, ...) 6. │ ├─httr::http_error(HEAD(x, ...)) 7. │ └─httr::HEAD(x, ...) 8. │ └─httr:::request_perform(req, hu$handle$handle) 9. │ ├─httr:::request_fetch(req$output, req$url, handle) 10. │ └─httr:::request_fetch.write_memory(req$output, req$url, handle) 11. │ └─curl::curl_fetch_memory(url, handle = handle) 12. └─curl:::raise_libcurl_error(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'igvShiny.Rmd' failed with diagnostics: Timeout was reached [gladki.pl]: Connection timed out after 10002 milliseconds --- failed re-building ‘igvShiny.Rmd’ SUMMARY: processing the following file failed: ‘igvShiny.Rmd’ Error: Vignette re-building failed. Execution halted