##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunotation
###
##############################################################################
##############################################################################


* checking for file ‘immunotation/DESCRIPTION’ ... OK
* preparing ‘immunotation’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘immunotation_vignette.Rmd’ using rmarkdown

Quitting from immunotation_vignette.Rmd:392-397 [unnamed-chunk-23]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `getURL()`:
! 'getURL()' failed:
  URL: http://www.allelefrequencies.net/pop6001c.asp?pop_id=3222
  error: cannot open the connection
---
Backtrace:
    ▆
 1. └─immunotation::query_population_detail(as.numeric(sel1$population_id))
 2.   ├─base::rbind(pop_df, query_single_population_detail(pop_id))
 3.   │ └─base::rbind(deparse.level, ...)
 4.   └─immunotation:::query_single_population_detail(pop_id)
 5.     └─immunotation:::read_population_detail(pop_url, population_id)
 6.       └─immunotation:::getURL(url, read_method = "html")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'immunotation_vignette.Rmd' failed with diagnostics:
'getURL()' failed:
  URL: http://www.allelefrequencies.net/pop6001c.asp?pop_id=3222
  error: cannot open the connection
--- failed re-building ‘immunotation_vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘immunotation_vignette.Rmd’

Error: Vignette re-building failed.
Execution halted