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### Running command:
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###   /home/biocbuild/R/R/bin/R CMD check --install=check:rols.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings rols_3.3.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.21-bioc/meat/rols.Rcheck’
* using R Under development (unstable) (2024-11-24 r87369)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
    aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: openEuler 24.03 (LTS)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘rols/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘rols’ version ‘3.3.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘rols’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... ERROR
Running examples in ‘rols-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: CVParam
> ### Title: Controlled Vocabulary
> ### Aliases: CVParam charIsCVParam cvCharToCVPar as.character.CVParam
> ###   show,CVParam-method rep,CVParam-method
> 
> ### ** Examples
> 
> 
> ## User param
> CVParam(name = "A user param", value = "the value")
[, , A user param, the value] 
> ## CVParam ESI from PSI's Mass Spectrometry ontology
> Term("MS", "MS:1000073")
Error in if (grepl("ebi.ac.uk", loc)) { : argument is of length zero
Calls: Term -> Term -> .local -> Term -> Term -> .local
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
  ── Error ('test_Terms.R:2:1'): (code run outside of `test_that()`) ─────────────
  Error in `if (grepl("ebi.ac.uk", loc)) {
      uri <- sub("/[a-zA-z]+\\.owl$", "", loc)
  } else if (grepl("purl.obolibrary.org", loc)) {
      uri <- "http://purl.obolibrary.org/obo"
  } else stop("Unknown fileLocation")`: argument is of length zero
  Backtrace:
      ▆
   1. ├─rols::Term(go, "GO:0032801") at test_Terms.R:2:1
   2. └─rols::Term(go, "GO:0032801")
   3.   └─rols (local) .local(object, ...)
  
  [ FAIL 7 | WARN 0 | SKIP 0 | PASS 74 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 ERRORs
See
  ‘/home/biocbuild/bbs-3.21-bioc/meat/rols.Rcheck/00check.log’
for details.