##############################################################################
##############################################################################
###
### Running command:
###
###   E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:schex.install-out.txt --library=E:\biocbuild\bbs-3.21-bioc\R\library --no-vignettes --timings schex_1.21.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'E:/biocbuild/bbs-3.21-bioc/meat/schex.Rcheck'
* using R Under development (unstable) (2025-01-21 r87610 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.3.0
    GNU Fortran (GCC) 13.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'schex/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'schex' version '1.21.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'schex' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plot_hexbin_bivariate.Rd: ggplot2
  plot_hexbin_density.Rd: ggplot2
  plot_hexbin_fc.Rd: ggplot2
  plot_hexbin_feature.Rd: ggplot2
  plot_hexbin_feature_plus.Rd: ggforce, ggplot2
  plot_hexbin_interact.Rd: ggplot2
  plot_hexbin_meta.Rd: ggplot2
  plot_hexbin_meta_plus.Rd: ggforce, ggplot2
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                          user system elapsed
make_hexbin              24.45   3.71   82.89
plot_hexbin_meta         16.91   1.53   18.67
plot_hexbin_meta_plus    16.55   1.26   18.00
plot_hexbin_interact     15.81   1.35   17.46
plot_hexbin_feature      15.32   1.42   17.12
plot_hexbin_feature_plus 14.92   1.14   17.48
plot_hexbin_fc           14.72   0.92   15.88
plot_hexbin_bivariate    13.89   1.16   15.33
make_hexbin_label        13.54   1.24   15.14
plot_hexbin_density      13.50   0.95   14.65
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'E:/biocbuild/bbs-3.21-bioc/meat/schex.Rcheck/00check.log'
for details.