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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:sesame.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings sesame_1.25.3.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.21-bioc/meat/sesame.Rcheck’
* using R Under development (unstable) (2025-01-22 r87618)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘sesame/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘sesame’ version ‘1.25.3’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘sesame’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                                user system elapsed
imputeBetasByGenomicNeighbors 38.113  1.334  39.642
inferSex                      23.337  1.089  24.533
sesameQC_calcStats            22.156  1.611  23.883
sesameQC_plotHeatSNPs         19.519  1.672  21.349
imputeBetas                   18.967  1.487  20.548
ELBAR                         16.614  3.032  19.797
diffRefSet                    15.524  0.622  16.220
sesameQC_plotBetaByDesign     12.714  1.485  14.340
inferSpecies                  13.043  0.660  13.765
sesameQC_plotBar              12.997  0.447  13.522
getRefSet                     12.537  0.465  13.133
compareMouseStrainReference   11.972  0.417  12.493
compareReference              11.505  0.603  12.215
matchDesign                   10.869  0.681  11.620
DML                            9.264  1.201  10.531
visualizeGene                  9.490  0.750  10.327
sdf_read_table                 9.021  0.428   9.511
estimateLeukocyte              8.285  0.550   8.901
inferTissue                    7.066  1.389   8.485
DMR                            7.900  0.262   8.243
inferStrain                    7.448  0.584   8.077
deidentify                     7.175  0.370   7.612
dyeBiasCorrMostBalanced        7.100  0.315   7.456
getMask                        6.573  0.645   7.260
dyeBiasNL                      5.958  0.426   6.421
openSesame                     5.482  0.851   6.372
createUCSCtrack                5.938  0.355   6.340
probeSuccessRate               5.576  0.464   6.082
reIdentify                     5.410  0.385   5.854
bisConversionControl           4.723  0.269   5.025
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK