##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r spatialDE -R && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data spatialDE
###
##############################################################################
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* checking for file 'spatialDE/DESCRIPTION' ... OK
* preparing 'spatialDE':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'spatialDE.Rmd' using rmarkdown
Channels:
 - conda-forge
Platform: win-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: C:\Users\biocbuild\.basilisk\1.19.3\spatialDE\1.13.0\env

  added / updated specs:
    - python=3.12.8


The following NEW packages will be INSTALLED:

  bzip2              conda-forge/win-64::bzip2-1.0.8-h2466b09_7 
  ca-certificates    conda-forge/win-64::ca-certificates-2025.1.31-h56e8100_0 
  libexpat           conda-forge/win-64::libexpat-2.6.4-he0c23c2_0 
  libffi             conda-forge/win-64::libffi-3.4.6-h537db12_0 
  liblzma            conda-forge/win-64::liblzma-5.6.4-h2466b09_0 
  libsqlite          conda-forge/win-64::libsqlite-3.49.1-h67fdade_2 
  libzlib            conda-forge/win-64::libzlib-1.3.1-h2466b09_2 
  openssl            conda-forge/win-64::openssl-3.4.1-ha4e3fda_0 
  pip                conda-forge/noarch::pip-25.0.1-pyh8b19718_0 
  python             conda-forge/win-64::python-3.12.8-h3f84c4b_1_cpython 
  setuptools         conda-forge/noarch::setuptools-75.8.2-pyhff2d567_0 
  tk                 conda-forge/win-64::tk-8.6.13-h5226925_1 
  tzdata             conda-forge/noarch::tzdata-2025a-h78e105d_0 
  ucrt               conda-forge/win-64::ucrt-10.0.22621.0-h57928b3_1 
  vc                 conda-forge/win-64::vc-14.3-hbf610ac_24 
  vc14_runtime       conda-forge/win-64::vc14_runtime-14.42.34438-hfd919c2_24 
  wheel              conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1 


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
 - conda-forge
Platform: win-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
    current version: 24.11.3
    latest version: 25.1.1

Please update conda by running

    $ conda update -n base -c conda-forge conda



# All requested packages already installed.

Channels:
 - conda-forge
Platform: win-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... failed

LibMambaUnsatisfiableError: Encountered problems while solving:
  - package scipy-1.9.3-py38h0f6ee2a_0 requires python_abi 3.8.* *_cp38, but none of the providers can be installed

Could not solve for environment specs
The following packages are incompatible
\u251c\u2500 python 3.12.8**  is installable and it requires
\u2502  \u2514\u2500 python_abi 3.12.* *_cp312, which can be installed;
\u2514\u2500 scipy 1.9.3**  is not installable because there are no viable options
   \u251c\u2500 scipy 1.9.3 would require
   \u2502  \u2514\u2500 python_abi 3.8.* *_cp38, which conflicts with any installable versions previously reported;
   \u251c\u2500 scipy 1.9.3 would require
   \u2502  \u2514\u2500 python_abi 3.10.* *_cp310, which conflicts with any installable versions previously reported;
   \u251c\u2500 scipy 1.9.3 would require
   \u2502  \u2514\u2500 python_abi 3.11.* *_cp311, which conflicts with any installable versions previously reported;
   \u2514\u2500 scipy 1.9.3 would require
      \u2514\u2500 python_abi 3.9.* *_cp39, which conflicts with any installable versions previously reported.


Quitting from spatialDE.Rmd:122-125 [stabilize]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `unlink2()`:
! failed to remove 'C:\Users\biocbuild/.basilisk/1.19.3/spatialDE/1.13.0/env'
---
Backtrace:
    ▆
 1. └─spatialDE::stabilize(Rep11_MOB_0)
 2.   └─basilisk::basiliskStart(spatialDE_env, testload = "scipy.optimize")
 3.     └─basilisk::obtainEnvironmentPath(env)
 4.       └─basilisk::setupBasiliskEnv(...)
 5.         └─basilisk.utils::unlink2(envpath)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'spatialDE.Rmd' failed with diagnostics:
failed to remove 'C:\Users\biocbuild/.basilisk/1.19.3/spatialDE/1.13.0/env'
--- failed re-building 'spatialDE.Rmd'

SUMMARY: processing the following file failed:
  'spatialDE.Rmd'

Error: Vignette re-building failed.
Execution halted