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###
### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ttgsea
###
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* checking for file ‘ttgsea/DESCRIPTION’ ... OK
* preparing ‘ttgsea’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘ttgsea.Rmd’ using rmarkdown
/Users/biocbuild/Library/Python/3.9/lib/python/site-packages/urllib3/__init__.py:35: NotOpenSSLWarning: urllib3 v2 only supports OpenSSL 1.1.1+, currently the 'ssl' module is compiled with 'LibreSSL 2.8.3'. See: https://github.com/urllib3/urllib3/issues/3020
  warnings.warn(

Quitting from ttgsea.Rmd:89-117 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `py_call_impl()`:
! ValueError: Unrecognized keyword arguments passed to Embedding: {'input_length': 30}
Run `reticulate::py_last_error()` for details.
---
Backtrace:
     ▆
  1. ├─ttgsea::fit_model(...)
  2. │ └─model %>% ...
  3. ├─keras::fit(., x_train, y_train, batch_size, epochs, ...)
  4. ├─ttgsea::bi_lstm(num_tokens, embedding_dim, length_seq, num_units)
  5. │ └─... %>% keras::layer_dense(1)
  6. ├─keras::layer_dense(., 1)
  7. │ └─keras::create_layer(...)
  8. ├─keras::bidirectional(...)
  9. │ └─keras::create_layer(keras$layers$Bidirectional, object, args)
 10. └─keras::layer_embedding(...)
 11.   └─keras::create_layer(keras$layers$Embedding, object, args)
 12.     ├─base::do.call(layer_class, args)
 13.     └─reticulate (local) `<python.builtin.type>`(...)
 14.       └─reticulate:::py_call_impl(callable, call_args$unnamed, call_args$named)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'ttgsea.Rmd' failed with diagnostics:
ValueError: Unrecognized keyword arguments passed to Embedding: {'input_length': 30}
Run `reticulate::py_last_error()` for details.
--- failed re-building ‘ttgsea.Rmd’

SUMMARY: processing the following file failed:
  ‘ttgsea.Rmd’

Error: Vignette re-building failed.
Execution halted