############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data BioMartGOGeneSets ### ############################################################################## ############################################################################## * checking for file ‘BioMartGOGeneSets/DESCRIPTION’ ... OK * preparing ‘BioMartGOGeneSets’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘biomart.Rmd’ using rmarkdown Quitting from biomart.Rmd:72-75 [unnamed-chunk-7] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `.getAttributes()`: ! biomaRt error: looks like we're connecting to incompatible version of BioMart. --- Backtrace: ▆ 1. └─biomaRt::useDataset(dataset = "hsapiens_gene_ensembl", mart = ensembl) 2. └─biomaRt:::.getAttributes(mart, verbose = verbose) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'biomart.Rmd' failed with diagnostics: biomaRt error: looks like we're connecting to incompatible version of BioMart. --- failed re-building ‘biomart.Rmd’ --- re-building ‘genesets.Rmd’ using rmarkdown --- finished re-building ‘genesets.Rmd’ --- re-building ‘supported_organisms.Rmd’ using rmarkdown --- finished re-building ‘supported_organisms.Rmd’ --- re-building ‘version.Rmd’ using rmarkdown --- finished re-building ‘version.Rmd’ SUMMARY: processing the following file failed: ‘biomart.Rmd’ Error: Vignette re-building failed. Execution halted