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###
### Running command:
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###   chmod a+r TCGAWorkflow -R && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data TCGAWorkflow
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* checking for file 'TCGAWorkflow/DESCRIPTION' ... OK
* preparing 'TCGAWorkflow':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'TCGAWorkflow.Rmd' using rmarkdown

Quitting from TCGAWorkflow.Rmd:538-553 [unnamed-chunk-10]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `GDCdownload.aux()`:
! There was an error in the download process (we might had a connection problem with GDC server).
Please run this function it again.
Try using method = `client` or setting files.per.chunk to a small number.
---
Backtrace:
    ▆
 1. └─TCGAbiolinks::GDCdownload(query)
 2.   └─base::tryCatch(...)
 3.     └─base (local) tryCatchList(expr, classes, parentenv, handlers)
 4.       └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 5.         └─value[[3L]](cond)
 6.           └─TCGAbiolinks:::GDCdownload.by.chunk(...)
 7.             └─TCGAbiolinks:::GDCdownload.aux(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'TCGAWorkflow.Rmd' failed with diagnostics:
There was an error in the download process (we might had a connection problem with GDC server).
Please run this function it again.
Try using method = `client` or setting files.per.chunk to a small number.
--- failed re-building 'TCGAWorkflow.Rmd'

SUMMARY: processing the following file failed:
  'TCGAWorkflow.Rmd'

Error: Vignette re-building failed.
Execution halted