############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data seqpac ### ############################################################################## ############################################################################## * checking for file ‘seqpac/DESCRIPTION’ ... OK * preparing ‘seqpac’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘seqpac_-_A_guide_to_sRNA_analysis_using_sequence-based_counts.Rmd’ using rmarkdown # reads processed: 7902 # reads with at least one alignment: 7 (0.09%) # reads that failed to align: 7895 (99.91%) Reported 67 alignments Quitting from seqpac_-_A_guide_to_sRNA_analysis_using_sequence-based_counts.Rmd:160-189 [unnamed-chunk-1] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `options()`: ! invalid 'scipen' --- Backtrace: ▆ 1. └─seqpac::PAC_mapper(pac, ref = ref_tRNA, override = TRUE) 2. └─seqpac::map_reanno(...) 3. └─seqpac::import_reanno(...) 4. └─base::options(scipen = opt_sci) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'seqpac_-_A_guide_to_sRNA_analysis_using_sequence-based_counts.Rmd' failed with diagnostics: invalid 'scipen' --- failed re-building ‘seqpac_-_A_guide_to_sRNA_analysis_using_sequence-based_counts.Rmd’ SUMMARY: processing the following file failed: ‘seqpac_-_A_guide_to_sRNA_analysis_using_sequence-based_counts.Rmd’ Error: Vignette re-building failed. Execution halted