############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.23-bioc-gpu/R/bin/R CMD build --keep-empty-dirs --no-resave-data scviR ### ############################################################################## ############################################################################## * checking for file ‘scviR/DESCRIPTION’ ... OK * preparing ‘scviR’: * checking DESCRIPTION meta-information ... OK * installing the package (it is needed to build vignettes) * creating vignettes ... ERROR --- re-building ‘citeseq_tut.Rmd’ using rmarkdown --- finished re-building ‘citeseq_tut.Rmd’ --- re-building ‘compch12.Rmd’ using rmarkdown The magick package is required to crop "/tmp/RtmpGw6y4G/Rbuild1cd987148ecbb/scviR/vignettes/compch12_files/figure-html/lkkey-1.png" but not available. The magick package is required to crop "/tmp/RtmpGw6y4G/Rbuild1cd987148ecbb/scviR/vignettes/compch12_files/figure-html/lkadt-1.png" but not available. The magick package is required to crop "/tmp/RtmpGw6y4G/Rbuild1cd987148ecbb/scviR/vignettes/compch12_files/figure-html/dosubcl-1.png" but not available. The magick package is required to crop "/tmp/RtmpGw6y4G/Rbuild1cd987148ecbb/scviR/vignettes/compch12_files/figure-html/lkgra-1.png" but not available. The magick package is required to crop "/tmp/RtmpGw6y4G/Rbuild1cd987148ecbb/scviR/vignettes/compch12_files/figure-html/lktotumap-1.png" but not available. The magick package is required to crop "/tmp/RtmpGw6y4G/Rbuild1cd987148ecbb/scviR/vignettes/compch12_files/figure-html/domattot-1.png" but not available. The magick package is required to crop "/tmp/RtmpGw6y4G/Rbuild1cd987148ecbb/scviR/vignettes/compch12_files/figure-html/lkconc-1.png" but not available. The magick package is required to crop "/tmp/RtmpGw6y4G/Rbuild1cd987148ecbb/scviR/vignettes/compch12_files/figure-html/lksubsss-1.png" but not available. The magick package is required to crop "/tmp/RtmpGw6y4G/Rbuild1cd987148ecbb/scviR/vignettes/compch12_files/figure-html/lkgradvi-1.png" but not available. --- finished re-building ‘compch12.Rmd’ --- re-building ‘new_citeseq.Rmd’ using rmarkdown Quitting from new_citeseq.Rmd:41-48 [doe44] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `py_module_import()`: ! ImportError: Numba needs NumPy 2.3 or less. Got NumPy 2.4. Run `reticulate::py_last_error()` for details. --- Backtrace: ▆ 1. └─scviR::muonR() 2. └─reticulate::import("muon") 3. └─reticulate:::py_module_import(module, convert = convert) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'new_citeseq.Rmd' failed with diagnostics: ImportError: Numba needs NumPy 2.3 or less. Got NumPy 2.4. Run `reticulate::py_last_error()` for details. --- failed re-building ‘new_citeseq.Rmd’ --- re-building ‘scviR.Rmd’ using rmarkdown --- finished re-building ‘scviR.Rmd’ SUMMARY: processing the following file failed: ‘new_citeseq.Rmd’ Error: Vignette re-building failed. Execution halted