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###
### Running command:
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###   /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data fluentGenomics
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* checking for file ‘fluentGenomics/DESCRIPTION’ ... OK
* preparing ‘fluentGenomics’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘fluentGenomics.Rmd’ using rmarkdown

Quitting from fluentGenomics.Rmd:220-222 [gse]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! unable to open database file
---
Backtrace:
     ▆
  1. ├─tximport::summarizeToGene(se)
  2. └─tximeta::summarizeToGene(se)
  3.   └─tximeta (local) .local(object, ...)
  4.     ├─base::suppressMessages(...)
  5.     │ └─base::withCallingHandlers(...)
  6.     ├─AnnotationDbi::select(txdb, keys(txdb, "TXNAME"), "GENEID", "TXNAME")
  7.     ├─GenomicFeatures (local) select(txdb, keys(txdb, "TXNAME"), "GENEID", "TXNAME")
  8.     │ └─GenomicFeatures:::.select(x, keys, columns, keytype, ...)
  9.     │   └─AnnotationDbi::testSelectArgs(...)
 10.     │     └─AnnotationDbi:::.testForValidKeys(x, keys, keytype, fks)
 11.     ├─AnnotationDbi::keys(txdb, "TXNAME")
 12.     └─GenomicFeatures (local) keys(txdb, "TXNAME")
 13.       └─AnnotationDbi:::smartKeys(x = x, keytype = keytype, ..., FUN = .keys)
 14.         └─GenomicFeatures:::.keys(x, keytype)
 15.           └─AnnotationDbi:::dbQuery(...)
 16.             ├─DBI::dbGetQuery(conn, SQL)
 17.             └─DBI::dbGetQuery(conn, SQL)
 18.               └─DBI (local) .local(conn, statement, ...)
 19.                 ├─DBI::dbFetch(rs, n = n, ...)
 20.                 └─RSQLite::dbFetch(rs, n = n, ...)
 21.                   └─RSQLite (local) .local(res, n, ...)
 22.                     └─RSQLite:::result_fetch(res@ptr, n = n)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'fluentGenomics.Rmd' failed with diagnostics:
unable to open database file
--- failed re-building ‘fluentGenomics.Rmd’

SUMMARY: processing the following file failed:
  ‘fluentGenomics.Rmd’

Error: Vignette re-building failed.
Execution halted