############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data maEndToEnd ### ############################################################################## ############################################################################## * checking for file ‘maEndToEnd/DESCRIPTION’ ... OK * preparing ‘maEndToEnd’: * checking DESCRIPTION meta-information ... OK * installing the package (it is needed to build vignettes) * creating vignettes ... ERROR --- re-building ‘MA-Workflow.Rmd’ using rmarkdown trying URL 'https://www.ebi.ac.uk/biostudies/files/E-MTAB-2967/E-MTAB-2967.sdrf.txt' Quitting from MA-Workflow.Rmd:223-228 [getDataEBI] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `download.file()`: ! cannot open URL 'https://www.ebi.ac.uk/biostudies/files/E-MTAB-2967/E-MTAB-2967.sdrf.txt' --- Backtrace: ▆ 1. └─utils::download.file(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'MA-Workflow.Rmd' failed with diagnostics: cannot open URL 'https://www.ebi.ac.uk/biostudies/files/E-MTAB-2967/E-MTAB-2967.sdrf.txt' --- failed re-building ‘MA-Workflow.Rmd’ SUMMARY: processing the following file failed: ‘MA-Workflow.Rmd’ Error: Vignette re-building failed. Execution halted